1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAGCTTACCGAACAAATTGCAGATAGAATTAGTTCGGACGGCGGAGGCGCTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattttaaatcagttcattcattgtgccaaaagtaaattcaaaatgttgcctgtttggtactactgcaacatatattcttgaagctggaagctag...
species | Zea mays |
transcript | GRMZM2G086052_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAAAGGGAATAGTGTCGGATAGTCTTCAG GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCGGGCTCCGCTEST: gi|60359085|gb|DN226058.1|DN226058
genomic: AAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCTEST: gi|211258233|gb|FL463465.1|FL463465
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: GGAAAAAACGGAATAGTATCCAATAGTCTCCAG GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCTEST: gi|76015304|gb|DT942474.1|DT942474
genomic: GGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCTEST: gi|71313521|gb|DR793328.1|DR793328
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCTEST: gi|71326242|gb|DR799815.1|DR799815
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCTEST: gi|78108017|gb|DV526435.1|DV526435
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCTEST: gi|78090508|gb|DV518882.1|DV518882
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCTEST: gi|74243641|gb|DT651555.1|DT651555
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCTEST: gi|71297895|gb|DR784918.1|DR784918
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGCTTACCGAACAAATTGCAGATAGAATTAGTTCGGACGGCGGAGGCGCTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattttaaatcagttcattcattgtgccaaaagtaaattcaaaatgttgcctgtttggtactactgcaacatatattcttgaagctggaagctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagtaaa