Sequence
atgc intronic sequence ATGC exonic sequenceGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatctcatggtagtaatgttgtgcacttgcactatatacagatacactgttgtgagttgtgacatagtaccgctgataattttcttctatcatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G085243_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g42320.4 (Oryza sativa), 5'ss of exon 7
--------------GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatctcatggtagtaatgttgtgcacttgcactatatacagatacactgttgtgagttgtgacatagtaccgct------gataattttcttctatcatt--------------------------------------------------
|||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||||||||||||||| ||||||||| | || || ||| || ||| |||| | | | || | | | || | | | | | | |||| || ||| | ||
TATTATTTCTACAGGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagcataccactaatattgtattgtact-acactctgttttcct-caatctgatcagaaataaagtggatttgtttacgaggatatcttctttccaaagttgtatgactgcacttgtactgttgttcaacctctttatgtcctcatttcag
upper sequence: GRMZM2G085243_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 7
GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatctcatggtagtaatgttgtgcacttgcactatatacagatacactgttgtgagttgtgacatagtaccgct------gataattttcttctatcatt--------------------------------------------------
|||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||||||||||||||| ||||||||| | || || ||| || ||| |||| | | | || | | | || | | | | | | |||| || ||| | ||
GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagcataccactaatattgtattgtact-acactctgttttcct-caatctgatcagaaataaagtggatttgtttacgaggatatcttctttccaaagttgtatgactgcacttgtactgttgttcaacctctttatgtcctcatttcag
upper sequence: GRMZM2G085243_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA15G41330.1 (Glycine max), 5'ss of exon 9
GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatctcatggtagtaatgttgtgcacttgcactatatacagatacactgttgtgagttgtgacatagtaccgctgataattttcttctatcatt-----
|| ||||| ||||| ||||| || || ||||| || || || ||||| |||||||| || ||||||||||| |||||||| |||||||| | ||| | ||| |||| | | | | || | || | | ||||| | || | | || | || |
GTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCTAATGCAAAGACGTTTCTTGAGAAGAGgtaagcttttcatcaatagca--gttctgcaagcaaaatgtgtggag-tgcatcaattttttttgtgt--ttgtgtccattatgtgctgtggctggtaccccttg
upper sequence: GRMZM2G085243_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA01G25940.2 (Glycine max), 5'ss of exon 8
GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatctcatggtagtaatgttgtgcacttgcactatatacaga-tacactgttgtgagttgtgacatagtaccgctgataattttcttctatcatt
|| ||||| || || ||||| || || ||||| || || || ||||| |||||||| || ||||||||||| |||||||| |||||||| | ||||| | || | | || | | | | | ||| | | || | | || | | ||
GTGGATCCATCGGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAGgtaagcttttcatcaatagtagttctgca-agcaaaagcatgtgtgaagtgaatcagaatttgtttttgtgttgtgtccattatgtgctgtggcccacacc
upper sequence: GRMZM2G085243_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA03G16660.1 (Glycine max), 5'ss of exon 9
GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatctcatggtagtaatgttg-tgcacttgcactata--tacagatacactgttgtgagttgtgacatagtaccgctgataattttcttctatcatt
|| ||||| ||||| ||||| || || ||||| || || || ||||| |||||||| || ||||||||||| |||||||| |||||||| ||| | | || | || |||| | || ||| | | | || | | | | | || |||||| | | |
GTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCTAATGCAAAGACTTTTCTTGAGAAGAGgtaaatagatttgtcgtgtcttttttaatgcatctcttcttcccttaccaaaaaaaaaggatgcatatcttcttcaaaa-gttgtcaattttgtggtttgg--
upper sequence: GRMZM2G085243_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA08G17810.3 (Glycine max), 5'ss of exon 9
GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatctcatggtagtaatgttgtgcacttgcactatatacagatacactgttgtgagttgtgacatagt-----accgctgataattttcttctatcatt
|| ||||| ||||| ||||| || || ||||| || || || ||||| |||||||| || ||||||||||| |||||||| |||||||| | ||| | | | | || || | || | || | |||||| || | ||||| | | ||| |
GTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCTAATGCAAAGACGTTTCTTGAGAAGAGgtaagcttttcatcagtaacagttcttcaagcaaaaac-atgtggag-tgcatcaaaatttgttgtgttgtatccattaagtactgatgaaatctgtctgtg---
upper sequence: GRMZM2G085243_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT1G79210.3 (Arabidopsis thaliana), 5'ss of exon 9
GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtac--ataatctcatggtagtaatgttgtgcacttgcact-atatacagatacactgttgtgagttgtgacatagtaccgctgataattttcttctatcatt
|| ||||| || || || || ||||| ||||| || || || |||||||| ||||| || ||||||||||| |||||||| ||||||| ||||| | | || || || | || || | || | | | | ||| | ||
GTGGATCCATCTGGCTCTTATTTCTCATGGAAAGCTTCTGCAATGGGAAAGAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAGgtgataataatttaccatttgtggtgatgagtttatgatcttggaagcatgtcatttcatcttagtctttgatcag---------------------------
upper sequence: GRMZM2G085243_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv01s0011g01960.t01 (Vitis vinifera), 5'ss of exon 8
GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgta-------cataatctcatggtagtaatgttgtgcacttgcactatatacagatacactgttgtgagttgtgacatagtaccgctgataattttcttctatcatt
|| ||||| ||||| ||||| ||||| ||||| || || || ||||| || ||||| ||||||||||||||||||||||| |||||||| || ||| | | | || || | | | | | | | || | | ||| | | | | |||||| ||
GTGGATCCATCAGGTTCATATTTCTCATGGAAAGCCTCCGCAATGGGGAAGAATGTCTCAAATGCAAAGACATTTCTTGAGAAGAGgtatttaaatcagaatttggttgctgtgtctttttaaaatgatatcaagcagcagcctatctttattgtgtttgatacttttgcaacaacaattttttta-------
upper sequence: GRMZM2G085243_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S61_202V6.1 (Physcomitrella patens), 5'ss of exon 8
GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatct-catggt-agta-atgttgtgcacttgcactatatacagataca-ctgttgtgagttgtgacatagtaccgctgataattttcttctatcatt----------------------------
|| ||||| |||||||| |||||||| |||||||||||||| || || || |||||||| ||||| ||||| || || || || |||| | |||| ||| | | | || |||| ||| ||| | | |||| | | | ||||| ||| | || ||| | | | | |
GTGGATCCTTCAGGATCGTACTTCTCATGGAAGGCATCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAGgtcagtcatcttcatacttggcacatattgtctttcataactttat-ccgttacatccatgataagttg--acaagtttccatatgtaactcgaattggtgacttattcactgggttcttctgttcaagcag
upper sequence: GRMZM2G085243_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S2_595V6.1 (Physcomitrella patens), 5'ss of exon 8
GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatctcatggtagtaatgttgtgcacttgcactatatacagatacactgttgtgagttgtgacat-agtaccgc-tgataattttcttctatcatt----------------------------------------------
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GTAGATCCATCAGGATCATACTTCTCATGGAAGGCATCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAGgtcggtcctttc-catacgttgcactctgttttcg-attctgta-gtctacgatgtggtagaatgcaggatgagttttgaacgagacgattcgtgtcatatttaatatgagatagtgactcattcgagaggcatactgttacaagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211072805|gb|FL453477.1|FL453477EST: CAGCCATGGTNNNNNNNTGTGTCAAATGCAAAGACATTTCTTGAAAAGAG ATACMCAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGAC
genomic: CAGCCATGG-GAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatc ... ttcattgtagATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAGgtacataatctcatggtagtaatgttgtgcacttgcactatatacagatacactgttgtgagttgtgacatagtaccgctgataattttcttctatcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG