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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCTCCCTTCTGTAGATTAGTACGAGAGACGCTTGTTGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaatactttaaaaccacaagtcaacgaatggcattataacagcgtggaagctgttgctaaacatcaccttagtagaattacacattagtttggttattctggattgagatatgtgctcgacaagagtgttagtaactgaaaattattcctgcag

Basic information

species Zea mays
transcript GRMZM2G085000_T04
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085000_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g44400.1 (Oryza sativa), 5'ss of exon 10
GGATCTCCCTTCTGTAGATTAGTACGAGAGACGCTTGTTGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaatactttaaaaccacaagtcaacgaatggcattataacagcgtggaagctgttgctaaacatcaccttagtagaattacacattagtttggtta---ttctggattgagatatgtgctcgacaagagtg-ttagtaactgaaaattattcctgcag
|||||||| ||||||| | ||||||||||||| |||||||| || || ||||||||  |||||||||||||  ||| | || |||    ||| | | |   ||| ||   |||      | |      |   |     |  |    ||| ||| |||     || |    |    |    ||||  |    | | |     ||||   | ||| |||||||||    ||||||
GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGCCACACTTGCTACACAGgtactcaata-acgtta----caccaatgacaaaattgctggatatgctgttagctatcatcagtgttttttcctgctgtaaaatcacaaccctgtatcacaaagccttgcaattgcaagcactacactcttggagtaactggtagctgaaaatt---tctgcag

upper sequence: GRMZM2G085000_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g44400.3 (Oryza sativa), 5'ss of exon 9
--------------------------------GGATCTCCCTTCTGTAGATTAGTACGAGAGACGCTTGTTGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaatactttaaaaccacaagtcaacgaatggcattataacagcgtggaagctgttgctaaacatcaccttagtagaattacacattagtttggtta---ttctggattgagatatgtgctcgacaagagtg-ttagtaactgaaaattattcctgcag
                                |||||||| ||||||| | ||||||||||||| |||||||| || || ||||||||  |||||||||||||  ||| | || |||    ||| | | |   ||| ||   |||      | |      |   |     |  |    ||| ||| |||     || |    |    |    ||||  |    | | |     ||||   | ||| |||||||||    ||||||
CAGAATCTGACCGGTGCATGCTTTATCATCAGGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGCCACACTTGCTACACAGgtactcaata-acgtta----caccaatgacaaaattgctggatatgctgttagctatcatcagtgttttttcctgctgtaaaatcacaaccctgtatcacaaagccttgcaattgcaagcactacactcttggagtaactggtagctgaaaatt---tctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40303424|gb|CK347811.1|CK347811
EST:     TTAGTACGAGAGACGCTTGTTGAGTTGGAATTGCCACATTTGCTACACAG                         CTGCGCACGTGGCAGCCTCAAACGACAAGAAGTTTTCAAGAAAAAGGGAGT
genomic: TTAGTACGAGAGACGCTTGTTGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... attcctgcagCTGCGCACGTGGCAGCCTCAAACGACAAGAAGTTTTCAAGAAAAAGGGAGT
EST: gi|148937629|gb|EC881822.2|EC881822
EST:     TTAGTACGAGAGACGCTTGTTGAGTTGGAATTGCCACATCTGCTACACAG                         CTGCGCACGTGGCAGCCTCAAACGACAAGAAGTTTTCAAGAAAAAGGGAGT
genomic: TTAGTACGAGAGACGCTTGTTGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... attcctgcagCTGCGCACGTGGCAGCCTCAAACGACAAGAAGTTTTCAAGAAAAAGGGAGT
EST: gi|60352714|gb|DN219687.1|DN219687
EST:     TTAGTACGAGAGACGCTTGTTGAGTTGGAATTGCCACATCTGCTACACAG                         CTGCGCACGTGGCAGCCTCAAACGACAAGAAGTTTTCAAGAAAAAGGGAGT
genomic: TTAGTACGAGAGACGCTTGTTGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... attcctgcagCTGCGCACGTGGCAGCCTCAAACGACAAGAAGTTTTCAAGAAAAAGGGAGT