Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCATGGCTTCCTCGGCAAACCTTTGGGCACTCATCATGGACGCAGGAACTGGTTTCTGTTCTCAGGTTTATGAGCTCTTACTAGTTTTCCTCCACAAGgtacaatattatactatccgagtgaagcctgacgaccatacctaataattaattgatttagccaggaagcgtaactctatttctgattatacacag

Basic information

species Zea mays
transcript GRMZM2G082099_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082099_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g07560.2 (Oryza sativa), 5'ss of exon 13
CAGCATGGCTTCCTCGGCAAACCTTTGGGCACTCATCATGGACGCAGGAACTGGTTTCTGTTCTCAGGTTTATGAGCTCTTACTAGTTTTCCTCCACAAGgtacaatattatactatccgagtgaagcctgacgacca-tacctaataattaattgatttagccaggaagcgtaactctatttctgattatacacag
  |  |||| || || ||||| |||||||| ||||| ||||| |||||||||||||||  |||||| ||| ||||||||| || |||||| || || |||||| | ||  || || |     ||| |  |||  |  | ||| |    |||| ||| ||  ||   ||  | ||||||| ||||  |||||||| ||
TTGTGTGGCGTCTTCAGCAAATCTTTGGGCCCTCATAATGGATGCAGGAACTGGTTTCCTTTCTCAAGTTCATGAGCTCTCACCAGTTTTTCTGCATAAGgtaaagtacaat-ctgt-----tgaggtgtgataattagtacttgg--attatttgttt--gctgagagtcctaactctgtttc-aattatacatag