1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATCCTGATCGCGGTGATCGGGATGGTCCTGTACTCGTACTTCTGCACTAGAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAGgtatgttctgcaacggttagctgagtttcatgggtagtagtaccatgtgttttgagcagacagattcccatggatagggtctggttgttggtttgagcag...
species | Zea mays |
transcript | GRMZM2G081848_T05 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAG GCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCCEST: gi|148936001|gb|EC880057.2|EC880057
genomic: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAGgtatgttctg ... ggtaccacagGCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCC
EST: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAG GCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCCEST: gi|149097658|gb|EE183555.2|EE183555
genomic: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAGgtatgttctg ... ggtaccacagGCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCC
EST: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAG GCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCCEST: gi|50322319|gb|CO517445.1|CO517445
genomic: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAGgtatgttctg ... ggtaccacagGCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCC
EST: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAG GCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCCEST: gi|76920165|gb|DV168041.1|DV168041
genomic: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAGgtatgttctg ... ggtaccacagGCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCC
EST: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAG GCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCCEST: gi|149105553|gb|EE291087.2|EE291087
genomic: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAGgtatgttctg ... ggtaccacagGCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCC
EST: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAG GCAAAGGAGGGGGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCCEST: gi|149102836|gb|EE288178.2|EE288178
genomic: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAGgtatgttctg ... ggtaccacagGCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCC
EST: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAG GCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCCEST: gi|148991599|gb|EE033130.2|EE033130
genomic: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAGgtatgttctg ... ggtaccacagGCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCC
EST: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAG GCAAAGGAGGGGGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCCEST: gi|78115445|gb|DV533833.1|DV533833
genomic: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAGgtatgttctg ... ggtaccacagGCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCC
EST: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAG GCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCC
genomic: GAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAGgtatgttctg ... ggtaccacagGCAAAGGAGGGTGAATCGAACCCTCTGATCTTGGATTCCCTGAGCGCCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCCTGATCGCGGTGATCGGGATGGTCCTGTACTCGTACTTCTGCACTAGAGAGACTCAGCAGAAGCCGGCAGAGGCCTCCCCGCAAGCCATCCTGCAGgtatgttctgcaacggttagctgagtttcatgggtagtagtaccatgtgttttgagcagacagattcccatggatagggtctggttgttggtttgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG