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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAACTAGGTGGCTGAGGTTCTGCCAATACGGTAGCATTTATTGTAGCTTAAGTTTGGTCGAGAATGTGACAAGAGTCTTGCTCCAGgtcagctttcatttggccagtgagcctgagatgctgctcgactcattgttttggaggcagcaaccatatctaacaccaagttttttatttcacaatttgtatgagcag

Basic information

species Zea mays
transcript GRMZM2G081812_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081812_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os09g38790.2 (Oryza sativa), 5'ss of exon 6
------------CAAAACTAGGTGGCTGAGGTTCTGCCAATACGGTAGCATTTATTGTAGCTTAAGTTTGGTCGAGAATGTGACAAGAGTCTTGCTCCAGgtcagctttcattt-ggccagtgagcctg-------------------agatgctgctcgactcattgttttggaggcag------caaccatatctaacaccaagttttttatttcacaatttgtatgagcag
             | ||||||||||||||| |||||||||||| ||| ||||||||||| ||||| ||||||||||| |||| ||||| | | | ||||||||||||||||||| |||| |||||||||                   |||   |    |  |  || |||||     |       ||| |||||||||||||   | | || |  ||||||  || ||| |||
TGGGTTTGTAACAAGAACTAGGTGGCTGAGCTTCTGCCAATACCGTAACATTTATTGTAACTTAATTTTGGTCGAGATTGTGCCAAGAATTTGGTTCCAGgtcagctttcattttggcccgtgagcctggtacttatgttcaaagagaagagattaactgctttttttttttgttcttaatcatgccaatcatatctaacaccgtctctcttctcccacaat--gtgtgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9742652|gb|BE518800.1|BE518800
EST:     TTTATTGTAGCTTAAGTTTGGTCGAGAATGTGACAAGAGTCTTGCTCCAG                         ATGAACTCTGTTGACGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTG
genomic: TTTATTGTAGCTTAAGTTTGGTCGAGAATGTGACAAGAGTCTTGCTCCAGgtcagctttc ... gtatgagcagATGAACTCTGTTGACGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTG
EST: gi|9742881|gb|BE519029.1|BE519029
EST:     TTTATTGTAGCTTAAGTTTGGTCGAGAATGTGACAAGAGTCTTGCTCCAG                         ATGAACTCTGTTGACGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTG
genomic: TTTATTGTAGCTTAAGTTTGGTCGAGAATGTGACAAGAGTCTTGCTCCAGgtcagctttc ... gtatgagcagATGAACTCTGTTGACGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTG
EST: gi|60394945|gb|DN227814.1|DN227814
EST:     TTTATTGTAGCTTAAGTTTGGTCGAGAATGTGACAAGAGTCTTGCTCCAG                         ATGAACTCTGTTGACGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTG
genomic: TTTATTGTAGCTTAAGTTTGGTCGAGAATGTGACAAGAGTCTTGCTCCAGgtcagctttc ... gtatgagcagATGAACTCTGTTGACGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTG