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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGATAGGATGGGCTGCAAAAGGTACCTGACTCCAAAAGACATAGTTGATGGTTTACCCAATCTAAATCTTGCCTTCGTGGCTCATATTTTCCAAAAAAGgtacgtgttgttacaaactttcaaacaaatcatctttgtatagatgttttacataggtcaatatgtagtttttctacgagctggctataattctgaaatg...

Basic information

species Zea mays
transcript GRMZM2G081380_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081380_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g33080.1 (Oryza sativa), 5'ss of exon 7
CAGATAGGATGGGCTGCAAAAGGTACCTGACTCCAAAAGACATAGTTGATGGTTTACCCAATCTAAATCTTGCCTTCGTGGCTCATATTTTCCAAAAAAGgtacgtgttgtt---acaaactttcaaacaaatc--atctttgtatagatgttttacataggtcaatatgtagtttttctacgagctggctataattctgaaatg-
|||||||||||||||||||||| || ||||| ||||||||||| || || |||||||| |||||||||||||| || ||||||||||||||||| ||||||||    | |||   | ||  | |  |   |||   || ||| |  | |    ||  ||       |   | |||||| ||  |     |     ||    | |  
CAGATAGGATGGGCTGCAAAAGATATCTGACCCCAAAAGACATTGTCGACGGTTTACCAAATCTAAATCTTGCTTTTGTGGCTCATATTTTCCAGAAAAGgtatagatagttctcataatttctttatttaatttaatattttttcaaagaaattgaat----ttctgcttggtttttttattattc--cctccgtttcatattat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60340714|gb|DN207687.1|DN207687
EST:     GGTTTACCCAATCTAAATCTTGCCTTCGTGGCTCATATTTTCCAAAAAAG                         AAATGGGTTGTCCAAACAAATGAAACAAGTTTCCTTTGTGGATGGACTCTC
genomic: GGTTTACCCAATCTAAATCTTGCCTTCGTGGCTCATATTTTCCAAAAAAGgtacgtgttg ... tttattgcagAAATGGGTTGTCCAAACAAATGAAACAAGTTTCCTTTGTGGATGGACTCTC