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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAGgtaaaatcttctgctcatgaagtgcttaattaatttgaactatttttttagaaaaacaaaatttggcagtaaaaaatatctcttcttatcttgctatcttttggcag

Basic information

species Zea mays
transcript GRMZM2G079468_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079468_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g56640.2 (Oryza sativa), 5'ss of exon 4
---------------------------TTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAGgtaaaa-----tcttctgctcatgaagtgcttaattaatttgaactatttttttagaaaaac-aaaatttggcagtaa-aaaatatctc-ttcttatcttgctatcttttggcag
                           | |||||||||||||| ||  |||||||||   | |||||| ||||||||||||| |||||||||||||| ||||||||       |||  | || ||| || ||    |||||   |  || | || ||  ||   ||||||  ||||    | ||  ||   ||| ||||    || ||| |||||
CTTCATTCTCTTGAACATTTCATACAGTAACTTTGTGGCCTCCCTCATCATCCCCATATCTGTACCCGATGCCTGTGTATGGGGAGGCCTCCAACCATAGgtaaaaaaagcctttccacacaggaactgttt---caatttatccagttgtcttggactaattgaaatttatcagttctgagatgccttactctgatctcaaaatattt-ggcag

upper sequence: GRMZM2G079468_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g56640.3 (Oryza sativa), 5'ss of exon 7
TTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAGgtaaaa-----tcttctgctcatgaagtgcttaattaatttgaactatttttttagaaaaac-aaaatttggcagtaa-aaaatatctc-ttcttatcttgctatcttttggcag
| |||||||||||||| ||  |||||||||   | |||||| ||||||||||||| |||||||||||||| ||||||||       |||  | || ||| || ||    |||||   |  || | || ||  ||   ||||||  ||||    | ||  ||   ||| ||||    || ||| |||||
TAACTTTGTGGCCTCCCTCATCATCCCCATATCTGTACCCGATGCCTGTGTATGGGGAGGCCTCCAACCATAGgtaaaaaaagcctttccacacaggaactgttt---caatttatccagttgtcttggactaattgaaatttatcagttctgagatgccttactctgatctcaaaatattt-ggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71772397|gb|DR970332.1|DR970332
EST:     TCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAG                         CTCTGTTAGTGTGGAGGAGCCAGATTATTCAATATATACAAGGGCAAGATA
genomic: TCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAGgtaaaatctt ... cttttggcagCTCTGTTAGTGTGGAGGAGCCAGATTATTCAATATATACAAGGGCAAGATA
EST: gi|76289273|gb|DV028841.1|DV028841
EST:     TCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAG                         CTCTGTTAGTGTGGAGGAGCCAGATTNATTCA-TATATACAAGGGCAAGAT
genomic: TCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAGgtaaaatctt ... cttttggcagCTCTGTTAGTGTGGAGGAGCCAGATT-ATTCAATATATACAAGGGCAAGAT