Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTGTTGAGACTGTAAAGAATGACTTTGGTAGCATTGATATCCTTGTACACTCTCTCGCCAACGGTCCTGAGgttaatttgcatcaaaatctttatatttcttgttttgttgccaccatcaggagtatttagttgaccttttcttttattatcacaaag

Basic information

species Zea mays
transcript GRMZM2G079256_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079256_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os09g10600.1 (Oryza sativa), 5'ss of exon 7
GAAGTTGTTGAGACTGTAAAGAATGACTTTGGTAGCATTGATATCCTTGTACACTCTCTCGCCAACGGTCCTGAGgttaatttgcatcaaaatctttatatttcttgtt-ttgttgcc-----accatcaggagtattta-gttgaccttttcttttattat-cacaaag
||||||| ||| ||||| |||||||||||||||| |||||| ||||| ||||||||||| || || |||||||||||        |||    ||||| | | |||  || | ||   |     | | ||   |  | | |  |  |  |||| || | || | | |||||
GAAGTTGCTGAAACTGTGAAGAATGACTTTGGTACCATTGACATCCTCGTACACTCTCTTGCAAATGGTCCTGAGgtatgccactatctttctctttctttatctcattgtcgtcatctgattatcctcgtcatcactaacatctatttttttttattttctgctcaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60345537|gb|DN212510.1|DN212510
EST:     ACTTTGGTAGCATTGATATCCTTGTACACTCTCTCGCCAACGGTCCTGAG                         GTAACAAAGTCACTGCTTGAGACATCAAGGAGAGGATACCTTGCTGCAATT
genomic: ACTTTGGTAGCATTGATATCCTTGTACACTCTCTCGCCAACGGTCCTGAGgttaatttgc ... tatcacaaagGTAACAAAGTCACTGCTTGAGACATCAAGGAGAGGATACCTTGCTGCAATT
EST: gi|31356068|gb|CD440425.1|CD440425
EST:     ACTTTGGTAGCATTGATATCCTTGTACACTCTCTCGCCAACGGTCCTGAG                         GTAACAAAGTCACTGCTTGAGACATCAAGGAGAGGATACCTTGCTGCAATT
genomic: ACTTTGGTAGCATTGATATCCTTGTACACTCTCTCGCCAACGGTCCTGAGgttaatttgc ... tatcacaaagGTAACAAAGTCACTGCTTGAGACATCAAGGAGAGGATACCTTGCTGCAATT
EST: gi|78076466|gb|DV504900.1|DV504900
EST:     ACTTTGGTAGCATTGATATCTTTGTACACTCTCTCGCCAACGGTCCTGAG                         GTAACAAAGTCACTG
genomic: ACTTTGGTAGCATTGATATCCTTGTACACTCTCTCGCCAACGGTCCTGAGgttaatttgc ... tatcacaaagGTAACAAAGTCACTG
EST: gi|67011703|gb|CO440452.1|CO440452
EST:     CTTTGGTAGCATTGATATCCTTGTACACTCTCTCCGC-AACGGTCCTGAA                         GTAACANAGTCACTGCTTGAGACATCAAGGAGAGGATACCCTTGCTGCAAT
genomic: CTTTGGTAGCATTGATATCCTTGTACACTCTCTC-GCCAACGGTCCTGAGgttaatttgc ... tatcacaaagGTAACAAAGTCACTGCTTGAGACATCAAGGAGAGGATACC-TTGCTGCAAT
EST: gi|71332949|gb|DR803501.1|DR803501
EST:     ACTTTGGTAGCATTGATATCCTTGTACACTCTCTCGCCAACGGTCCTGAG                         GTAACAAAGTCACTGCTTG
genomic: ACTTTGGTAGCATTGATATCCTTGTACACTCTCTCGCCAACGGTCCTGAGgttaatttgc ... tatcacaaagGTAACAAAGTCACTGCTTG