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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTGGACTCGAGCACTGAACATACCATTGCCTCATTCTTATGTTTTTCTGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAGgtcaatttcaatctttccaatccatcatacttgaaactgaggttctttacaattatttgttatttactcgatgcttgtaattttacttctcatccatttg...

Basic information

species Zea mays
transcript GRMZM2G078458_T04
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71298470|gb|DR785213.1|DR785213
EST:     TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAG                         GAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA
genomic: TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAGgtcaatttca ... tttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA
EST: gi|71766035|gb|DR963972.1|DR963972
EST:     TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAG                         GAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA
genomic: TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAGgtcaatttca ... tttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA
EST: gi|78108131|gb|DV526549.1|DV526549
EST:     TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAG                         GAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA
genomic: TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAGgtcaatttca ... tttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA
EST: gi|71319933|gb|DR796728.1|DR796728
EST:     TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAG                         GAAATTGATATTACAGCTAAGGATTGTAGTGCTGA
genomic: TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAGgtcaatttca ... tttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGA
EST: gi|148973503|gb|EE024603.2|EE024603
EST:     TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAG                         GAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCNTAA-CC
genomic: TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAGgtcaatttca ... tttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTC-TAAACC
EST: gi|71330009|gb|DR801742.1|DR801742
EST:     TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAG                         GAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA
genomic: TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAGgtcaatttca ... tttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA