Sequence
atgc intronic sequence ATGC exonic sequenceGGTCTAAGGCAGGAGGTCATTGTGGACCTTGTGGACCAATGTCGTTCATACAAGCAAAGAGTGGTGCAGCTTGTCAACTCAACATCgtaagtcactgcattatgttatactttttcaacgagtatatatacgaacaaatgaaaataattgttaaaacctagtatatggatatgagcgaaagggcct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G077844_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g22650.1 (Oryza sativa), 5'ss of exon 7
GGTCTAAGGCAGGAGGTCATTGTGGACCTTGTGGACCAATGTCGTTCATACAAGCAAAGAGTGGTGCAGCTTGTCAACTCAACATCgtaagtcactgcattatgt-tatactttttcaacgagtatatatac-gaacaaatgaaaataattgttaaaacctagtatatggatatgagcgaaagggcct
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GGTCTAAGACAGGAGGTTATTGTGGACCTTGTGGATCAATGTCGTTCTTACAAGCAGAGGGTGGTACAGCTTGTCAACTCAACCACgtaagttccttttttatgtctttgcctttccaaccgtcatatgaattgcagggaatcaggtagtgggaaacatgacatacatatttctgacttccttgtt--
upper sequence: GRMZM2G077844_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA04G08600.1 (Glycine max), 5'ss of exon 7
GGTCTAAGGCAGGAGGTCATTGTGGACCTTGTGGACCAATGTCGTTCATACAAGCAAAGAGTGGTGCAGCTTGTCAACTCAACATCgtaagtcactg---------cattatgttatactttttcaacgagtatatat-------acgaacaaatgaaaataattgt--------taaaacctagtatatggatatgagcgaaagggcct-------------------------------
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GGGCTTCAGCAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTGCACCTTGTTAATTCAACTTCgtaaggccttgttcccttttcattacgatgtaattattgtcatattatatattctttacatgtttgattcatgttaactctactctcaataaattttcttcttttaatccaaaccaaaaaccattaatcatgaatgattttgtgtacttttacag
upper sequence: GRMZM2G077844_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA17G26440.2 (Glycine max), 5'ss of exon 7
GGTCTAAGGCAGGAGGTCATTGTGGACCTTGTGGACCAATGTCGTTCATACAAGCAAAGAGTGGTGCAGCTTGTCAACTCAACATCgtaagtcactgcattatgttatactttttca-acgagtatatatacgaacaa-atgaaaataattgttaaa-acctagtatatggatatgagcgaaagggcct----------------------------------------------------------
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GGGATTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTTCACCTTGTCAACTCAACTTCgtaaggcctggaatccctttccatgatattatataatgatgactgagtacaatattttactcattgtttcgtgttcattgtat---ttttagtaaaatgtattatttttatccaaacaatatagtagttattattatggtcttttccgtcaatttttccag
upper sequence: GRMZM2G077844_T03 (Zea mays), 5'ss of exon 7
lower sequence: AT4G32760.1 (Arabidopsis thaliana), 5'ss of exon 7
GGTCTAAGGCAGGAGGTCATTGTGGACCTTGTGGACCAATGTCGTTCATACAAGCAAAGAGTGGTGCAGCTTGTCAACTCAACATCgtaagt-cactgcattatgttatactttttcaacgagtatatatacgaacaaatgaaaataattgttaaaacctagtatatggatatgagcgaaagggcct-
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GATCTCAAACAAGAGGTTATGGTCGATCTGGTGGAGCAGTGTCGTACATACAAACAAAGAGTGGTGCACCTCGTCAACTCGACTTCgtaagagctctttattttcctcttcggttccatttgat-tatctctttcatgtctcatataagttatatttcttggggtacg-agacgatttttttttttat
upper sequence: GRMZM2G077844_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv04s0008g03720.t01 (Vitis vinifera), 5'ss of exon 7
GGTCTAAGGCAGGAGGTCATTGTGGACCTTGTGGACCAATGTCGTTCATACAAGCAAAGAGTGGTGCAGCTTGTCAACTCAACATCgtaagtcactgca-ttatgttatactttttcaacgagtatatatacgaacaaatgaaaataattgttaaaacctagtatatggatatgagcgaaagggcct
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GGGCTCAGGCAGGAGGTTATCATGGACTTGGTAGATCAGTGTCGGACATACAAGCAAAGAGTGGTCCACCTTGTCAACTCAACTGCgtgaggcctcatacttcttttcttgttacatgctttgttaactttgtaatcattgtaccatatcactttgcattattttcatgcttctgctacctagaca-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26456448|gb|CA828031.1|CA828031EST: CAATGTCGTTCATACAAGCAAAGAGTGGTGCAGCTTGTCAACTCAACATC GGATGAGGACCTATTAAGTCAGGGCCTTACTTTGAATGATGATTTACAACG
genomic: CAATGTCGTTCATACAAGCAAAGAGTGGTGCAGCTTGTCAACTCAACATCgtaagtcact ... atggcaacagGGATGAGGACCTATTAAGTCAGGGCCTTACTTTGAATGATGATTTACAACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTCTAAGGCAGGAGGTCATTGTGGACCTTGTGGACCAATGTCGTTCATACAAGCAAAGAGTGGTGCAGCTTGTCAACTCAACATCgtaagtcactgcattatgttatactttttcaacgagtatatatacgaacaaatgaaaataattgttaaaacctagtatatggatatgagcgaaagggcct
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT