Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACATGGCTTTCGCACAGAACTTATATCCATGATTTTGGATTTAAAACCACGATTCTTGAGATTTCCTGgtatgctccgtgttttcttatttagaatcaggttcccaatgctaagatgtatatgatatattgcaatatattaatacatttaaggataatggactagattgcatgatgctattgtag

Basic information

species Zea mays
transcript GRMZM2G077299_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G077299_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g03730.2 (Oryza sativa), 5'ss of exon 7
GGACATGGCTTTCGCACAGAACTTATATCCATGATTTTGGATTTAAAACCACGATTCTTGAGATTTCCTGgtatgctccgtgttttcttatttagaatcaggttcccaatgctaagatgtatatgatatattgcaatatattaatacatttaaggataatggactagatt-gcatg-atgctattgtag
|||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||  |  | |||||  ||| | ||||| ||||   ||      ||||| || ||||              | |  | |  ||||||| |||| ||||  |||  |  | |||||||
GGACATGGTTTTCGCACAGAACTTATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagctatattttcccattgaaaatcaagttcttgat------atgtacat-atatgcca---------gacatgtctg-ggataattgacttgatttacattcaaacaattgtag

upper sequence: GRMZM2G077299_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os12g03470.5 (Oryza sativa), 5'ss of exon 7
GGACATGGCTTTCGCACAGAACTTATATCCATGATTTTGGATTTAAAACCACGATTCTTGAGATTTCCTGgtatgctccgtgttttcttatttagaatcaggttcccaatgctaagatgtatatgatatattgcaatatattaatacatttaaggataatggactagattgca--tgatgctattgtag
|||||||| |||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||| |||||||||  |  | |||||  ||| | ||||| ||||   ||      |  ||||||  |               |    | |  ||||||| |||| |||| |   | |  | |||||||
GGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCACGATTCTTGAGATTCCCTGgtatgagctatattttccaattgaaaatcaagttcttgatatctgcacatatatgtca--------------gacgtgtctg-ggataattgacttgatttccattcaaacaattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71441725|gb|DR822775.1|DR822775
EST:     ACTTATATCCATGATTTTGGATTTAAAACCACGATTCTTGAGATTTCCTG                         GAGGCTGCTTTGTAGAAGGTGGCTGGTTAAGAAATGCCTTTAGGTGGAGAG
genomic: ACTTATATCCATGATTTTGGATTTAAAACCACGATTCTTGAGATTTCCTGgtatgctccg ... gctattgtagGAGGCTGCTTTGTAGAAGGTGGCTGGTTAAGAAATGCCTTTAGGTGGAGAG