1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaatagaattttttttttcatctaaaattttatgatttctatcttgacatcagctgtctatgcttacattaatgtgctctctctctctctctctctctgggcag
species | Zea mays |
transcript | GRMZM2G077222_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGNTTGTTCNAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211505017|gb|FL316062.1|FL316062
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211265615|gb|FL356056.1|FL356056
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGNAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATNAGATAAACACAGCTEST: gi|211001384|gb|FL323102.1|FL323102
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211308384|gb|FL348182.1|FL348182
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211155354|gb|FL193264.1|FL193264
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: TTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCEST: gi|211464944|gb|FL327919.1|FL327919
genomic: TTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAA-Tgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGC
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211143697|gb|FL324988.1|FL324988
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211287060|gb|FL337502.1|FL337502
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211155352|gb|FL193262.1|FL193262
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: TGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGGAAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCEST: gi|24764139|gb|CA399306.1|CA399306
genomic: TGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAG-AAA-Tgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGC
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211388119|gb|FL310430.1|FL310430
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211541249|gb|FL353983.1|FL353983
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|31357653|gb|CD442010.1|CD442010
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211012723|gb|FL335935.1|FL335935
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211183895|gb|FL345854.1|FL345854
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211163533|gb|FL327752.1|FL327752
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTT-GTTCAAACTATCTGGCTACATAGACATCGNTAAGATNAACACAGCTEST: gi|211465954|gb|FL364649.1|FL364649
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACEST: gi|211239604|gb|FL338007.1|FL338007
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACAC
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211153739|gb|FL193240.1|FL193240
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: TTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCEST: gi|211478133|gb|FL352004.1|FL352004
genomic: TTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAA-Tgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGC
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211130568|gb|FL330782.1|FL330782
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211320240|gb|FL338455.1|FL338455
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211093607|gb|FL328988.1|FL328988
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211155342|gb|FL193252.1|FL193252
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGNCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAEST: gi|211356808|gb|FL332694.1|FL332694
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAA
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211158735|gb|FL327705.1|FL327705
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACEST: gi|211356810|gb|FL332696.1|FL332696
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGAC
EST: GTTGGAAAATGNCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211133468|gb|FL349783.1|FL349783
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211480395|gb|FL326614.1|FL326614
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAANANACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211432079|gb|FL309133.1|FL309133
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAAGACATCGATAAGATAAACACAGCEST: gi|211509614|gb|FL308773.1|FL308773
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATA-GACATCGATAAGATAAACACAGC
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211534207|gb|FL317060.1|FL317060
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACEST: gi|211297774|gb|FL337584.1|FL337584
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAAC
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211096961|gb|FL367333.1|FL367333
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAANAGACAACTGCCTGAAGTTGACANAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAANATAAACACAGCTEST: gi|211025945|gb|FL329790.1|FL329790
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211285077|gb|FL334450.1|FL334450
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATEST: gi|211243597|gb|FL313136.1|FL313136
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGAT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211453287|gb|FL343581.1|FL343581
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTEST: gi|211455408|gb|FL343588.1|FL343588
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaatagaattttttttttcatctaaaattttatgatttctatcttgacatcagctgtctatgcttacattaatgtgctctctctctctctctctctctgggcag
- - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG