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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTAACCATGACGTGATGCAAATTGTTGAAGTATTGGATGATAGAACAAGGGATTCAAGATTACTTGCCTTGCTTGACAAATACCATCAAGCACAAAGgtagatatcagttagatttcactttatgctgtatttaagattcatttccttaaggcactgattcctgctgtcacactggaagctaagcatcggggcaggc...

Basic information

species Zea mays
transcript GRMZM2G076484_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G076484_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g20580.1 (Oryza sativa), 5'ss of exon 7
CTGCTAACCATGACGTGATGCAAATTGTTGAAGTATTGGATGATAGAACAAGGGATTCAAGATTACTTGCCTTGCTTGACAAATACCATCAAGCACAAAGgtagatat--cagt-tagatttcactttatgctgtatttaagattcatttccttaaggcactgattcctgctgtcacac-tggaagctaagca-tcggggcaggc-
||||||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||| |||| ||||| || ||||||||| ||||||| |||||| |||  ||||   ||||| ||||  |||||||||  ||  ||    | | || |      || |     ||| |     ||||   ||| || |        
CTGCTAACCATGATGTGATGCAAATTGTTGAAGTATTGGATGACAGGTCAAGGGATTCAAGATTAGTTGCTTTGCTCGATAAATACCATAAAGCACAGAGgtaggtattgcagtacggattttacttgttgctgtatt--agtctc----catgaaagtctcactttcgaaaatcataggcaaaagcattgcaatcagcatgcatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32849255|gb|CD988936.1|CD988936
EST:     AGGGATTCAAGATTACTTGCCTTGCTTGACAAATACCATCAAGCACAAAG                         CAACAGGGTTTTGGTTTTTGTGCTGT
genomic: AGGGATTCAAGATTACTTGCCTTGCTTGACAAATACCATCAAGCACAAAGgtagatatca ... aatgaaacagCAACAGGGTTTTGGTTTTTGTGCTGT
EST: gi|32849273|gb|CD988954.1|CD988954
EST:     AGGGATTCAAGATTACTTGCCTTGCTTGACAAATACCATCAAGCACAAAG                         CAACAGGGTTTTGGTTTTTGTGCTGT
genomic: AGGGATTCAAGATTACTTGCCTTGCTTGACAAATACCATCAAGCACAAAGgtagatatca ... aatgaaacagCAACAGGGTTTTGGTTTTTGTGCTGT