1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTGATACTTGTGTTGTTACCGTGGGTCGTTGCCAAAGTGCTGTTCTCTGTATGGAATATGATGATTCCACTGGGATTCTGGCGGCTGCTGGAAGAGATATgtatgtacccttttaacctaacagggttttgaatacttcaatcctttaaatttatgtgatttgggttggaatttgttctgagaagtttatactcaccag
species | Zea mays |
transcript | GRMZM2G074466_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATGGAATATGATGATTCCACTGGGATTCTGGCGGCTGCTGGAAGAGATAT CACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTTCAAGCTTCAEST: gi|32933778|gb|CF038590.1|CF038590
genomic: ATGGAATATGATGATTCCACTGGGATTCTGGCGGCTGCTGGAAGAGATATgtatgtaccc ... tactcaccagCACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTTCAAGCTTCA
EST: ATGGAATATTTTGTTTCCACTGGGATTCTGGCGGCTGCTGGAAGAGATAT CACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTTCAAGCTTCAEST: gi|67010825|gb|CO439574.1|CO439574
genomic: ATGGAATATGATGATTCCACTGGGATTCTGGCGGCTGCTGGAAGAGATATgtatgtaccc ... tactcaccagCACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTTCAAGCTTCA
EST: ATGGAATATGATGATTCCACTGGGATTCTGGCGGCTGCTGGAAGAGATAT CACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTTCAAGCTTCAEST: gi|71437503|gb|DR818553.1|DR818553
genomic: ATGGAATATGATGATTCCACTGGGATTCTGGCGGCTGCTGGAAGAGATATgtatgtaccc ... tactcaccagCACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTTCAAGCTTCA
EST: ATGGAATATGATGATTCCACTGGGATTCTGGCGGCTGCTGGAAGAGATAT CACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTTNCAAGCTTCEST: gi|32850651|gb|CD990332.1|CD990332
genomic: ATGGAATATGATGATTCCACTGGGATTCTGGCGGCTGCTGGAAGAGATATgtatgtaccc ... tactcaccagCACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTT-CAAGCTTC
EST: ATGGAATATGATGATTCCACTGGGATTCTGGCGGCTTCTGGAAGAGATAT CACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTTCAAGCTTCAEST: gi|211489771|gb|FL012892.1|FL012892
genomic: ATGGAATATGATGATTCCACTGGGATTCTGGCGGCTGCTGGAAGAGATATgtatgtaccc ... tactcaccagCACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTTCAAGCTTCA
EST: ATGGAATATGATGATTCCACTGGGATTCTGGCGGCTGCTGGAAGAGATAT CACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTTCAAGCTTCAEST: gi|211489770|gb|FL012891.1|FL012891
genomic: ATGGAATATGATGATTCCACTGGGATTCTGGCGGCTGCTGGAAGAGATATgtatgtaccc ... tactcaccagCACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTTCAAGCTTCA
EST: ATGGAATATGATGATTCCACTGGGATTCTGGCGGCTGCTGGAAGAGATAT CACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTTCAAGCTTCA
genomic: ATGGAATATGATGATTCCACTGGGATTCTGGCGGCTGCTGGAAGAGATATgtatgtaccc ... tactcaccagCACGGCACATGTCTGGGATATTCGCTCCAGCAAGCAGATGTTCAAGCTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGATACTTGTGTTGTTACCGTGGGTCGTTGCCAAAGTGCTGTTCTCTGTATGGAATATGATGATTCCACTGGGATTCTGGCGGCTGCTGGAAGAGATATgtatgtacccttttaacctaacagggttttgaatacttcaatcctttaaatttatgtgatttgggttggaatttgttctgagaagtttatactcaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA