1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGCCGAAGATTTAGTGAGGGCACAAGTGCAGATCGTGAGATTCAGAGGACATTGATGGAGCTTCTAAATCAGTTAGATGGATTCGATGAGCTTGGGAAGgtatgccttttctgtgctaatgatattaaaatgttttttcatattaattgtctgctgttctgaggactgtcagtgctgaaggcgccttttggtgtagggc...
species | Zea mays |
transcript | GRMZM2G074037_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CATTGATGGAGCTTCTAAATCAGTTAGATGGATTCGATGAGCTTGGGAAG GTGAAAATKATCATGGCAACCAACCGGCCTGATGTTTTGGATCCTGCACTCEST: gi|78022855|gb|DV491242.1|DV491242
genomic: CATTGATGGAGCTTCTAAATCAGTTAGATGGATTCGATGAGCTTGGGAAGgtatgccttt ... gtttatatagGTGAAAATGATCATGGCAACCAACCGGCCTGATGTTTTGGATCCTGCACTC
EST: CATTGATGGAGCTTCTAAATCAGTTAGATGGATTCGATGAGCTTGGGAAG GTGAAAATGATCATGGCAACCAACCGGCCTGATGTTTTGGATCCTGCACTCEST: gi|211416916|gb|FL328808.1|FL328808
genomic: CATTGATGGAGCTTCTAAATCAGTTAGATGGATTCGATGAGCTTGGGAAGgtatgccttt ... gtttatatagGTGAAAATGATCATGGCAACCAACCGGCCTGATGTTTTGGATCCTGCACTC
EST: CATTGATGGAGCTTCTAAATCAGTTAGATGGATTCGATGAGCTTGGGAAG GTGAAAATGATCATGGCAACCAACCGGCCTGATGTTTTGGATCCTGCACTCEST: gi|6031401|gb|AW076303.1|AW076303
genomic: CATTGATGGAGCTTCTAAATCAGTTAGATGGATTCGATGAGCTTGGGAAGgtatgccttt ... gtttatatagGTGAAAATGATCATGGCAACCAACCGGCCTGATGTTTTGGATCCTGCACTC
EST: CATTGATGGAGCTTCTAAATCAGTTAGATGGATTCGATGAGCTTGGGAAG GTGAAAATGATCATGGCAACCAACCGGCCTGATGTTTTGGATCCTGCACTCEST: gi|5871518|gb|AW017989.1|AW017989
genomic: CATTGATGGAGCTTCTAAATCAGTTAGATGGATTCGATGAGCTTGGGAAGgtatgccttt ... gtttatatagGTGAAAATGATCATGGCAACCAACCGGCCTGATGTTTTGGATCCTGCACTC
EST: CATTGATGGAGCTTCTAAATCAGTTAGATGGATTCGATGAGCTTGGGAAG GTGAAAATGATCATGGCAACCAACCGGCCTGATGTTTTGGATCCTGCACTCEST: gi|60397395|gb|DN230211.1|DN230211
genomic: CATTGATGGAGCTTCTAAATCAGTTAGATGGATTCGATGAGCTTGGGAAGgtatgccttt ... gtttatatagGTGAAAATGATCATGGCAACCAACCGGCCTGATGTTTTGGATCCTGCACTC
EST: CATTGATGGAGCTTCTAAATCAGTTAGATGGATTCGATGAGCTTGGGAAG GTGAAAATGATCATGGCAACCAACCGGCCTGATGTTTTGGATCCTGCACTC
genomic: CATTGATGGAGCTTCTAAATCAGTTAGATGGATTCGATGAGCTTGGGAAGgtatgccttt ... gtttatatagGTGAAAATGATCATGGCAACCAACCGGCCTGATGTTTTGGATCCTGCACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCCGAAGATTTAGTGAGGGCACAAGTGCAGATCGTGAGATTCAGAGGACATTGATGGAGCTTCTAAATCAGTTAGATGGATTCGATGAGCTTGGGAAGgtatgccttttctgtgctaatgatattaaaatgttttttcatattaattgtctgctgttctgaggactgtcagtgctgaaggcgccttttggtgtagggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT