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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTATACCAAATGTTTATCGTCAATGCTGGTCCGGGCTTCCGGTTACTATGGAACACTGTGAAGTCCTTCCTTGATCCCAAAACGACCGCCAAGATACATgtgagtttccagtgaggtgcagattacagaaacagaactactttttttgcttgatggcattgattaatgtctcagatattcttatgtttttag

Basic information

species Zea mays
transcript GRMZM2G073571_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073571_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g04020.1 (Oryza sativa), 5'ss of exon 7
TCTATACCAAATGTTTATCGTCAATGCTGGTCCGGGCTTCCGGTTACTATGGAACACTGTGAAGTCCTTCCTTGATCCCAAAACGACCGCCAAGATACATgtgagtttccagtgaggtgcagattacagaaacagaactactttttttgcttgatggcattgattaatgtctcagatattcttatgtttttag--
 ||||| ||||||||||| ||||||||||||||||| || ||| |  |||||||||||||||||||||| || || || ||||| ||  ||||||||||||| ||| |  | |      |  | ||||         || |   |||||| ||       |  ||| || || || || |  ||| ||| |    
CCTATATCAAATGTTTATTGTCAATGCTGGTCCGGGGTTTCGGCTCTTATGGAACACTGTGAAGTCCTTTCTGGACCCAAAAACCACTTCCAAGATACATgtaagtctttatt------cttactaca---------cttcaacttttgcatgggaaagatacttagtgcctaaggtaattatatatttcttcag

upper sequence: GRMZM2G073571_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA11G12260.1 (Glycine max), 5'ss of exon 6
TCTATACCAAATGTTTATCGTCAATGCTGGTCCGGGCTTCCGGTTACTATGGAACACTGTGAAGTCCTTCCTTGATCCCAAAACGACCGCCAAGATACATgtgagtttccagtgaggtgcagattacagaaacagaactactttttt-tgcttgatggcattgattaatgtctcagatattctt----atgtt-tttag
||| | ||||||||||||| | |||||||| ||||| ||  |||| |||||||||||||| ||||| ||||||||||||||||| ||  | ||||| |||||  ||    | ||   |   | |  | |    ||      ||  |  || || |||||       ||||  |      |  ||    || ||  ||||
TCTCTGCCAAATGTTTATCATAAATGCTGGACCGGGATTTAGGTTGCTATGGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATTCATgtatgtaaa-aatgctatattg-tagctgcgttaggctcttttcatgatggtttatggctgctgacaatgcttggtgcctctttggaaatattgcttag

upper sequence: GRMZM2G073571_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA12G04460.1 (Glycine max), 5'ss of exon 6
TCTATACCAAATGTTTATCGTCAATGCTGGTCCGGGCTTCCGGTTACTATGGAACACTGTGAAGTCCTTCCTTGATCCCAAAACGACCGCCAAGATACATgtgagtttccag--tgaggtgcagattacagaaacagaact----actttttttgcttgatggcattgattaatgtctcagatattcttatgtt-tttag
||| | ||||||||||||| | |||||||| || || ||  |||| |||||||||||||| ||||| |||||||||||||| || ||  | ||||| |||||  ||    |   |    || || |  |  |  |     |    |    || ||  || || ||||| ||  || |||   |||    || ||  ||||
TCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTATGGAACACTGTCAAGTCTTTCCTTGATCCCAAGACAACTTCAAAGATTCATgtatgtagaaatgctatattgtagctgcctaaggctcttttcatgatggcttatggctgctgacattgcttggtgcctc---tatggaaatattacttag

upper sequence: GRMZM2G073571_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 7
TCTATACCAAATGTTTATCGTCAATGCTGGTCCGGGCTTCCGGTTACTATGGAACACTGTGAAGTCCTTCCTTGATCCCAAAACGACCGCCAAGATACATgtgagt----------ttccagtgaggtgcagattacagaaacagaactactttttttgcttgatggcattgattaatgtctcagatattct-tatgtttttag
||| | ||||||||||||  ||||||||||||| |||||  || | || ||||||||||| ||| | || || ||||||||||| ||  ||||||| |||||| ||          |||   |    | |  | | || |||       |   ||     |     | ||   ||  | |||  | | |    | | |  | ||
TCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTCATgtgcgtgaaaatgtttttcttctattattcttacttcataaattcgtagagccttcaaaatatgctgtataactttgtctctggggtttggaatttctcctcag

upper sequence: GRMZM2G073571_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 6
TCTATACCAAATGTTTATCGTCAATGCTGGTCCGGGCTTCCGGTTACTATGGAACACTGTGAAGTCCTTCCTTGATCCCAAAACGACCGCCAAGATACATgtgagtttccagtgaggtgcagattacagaaacagaac-tactttttttgcttgatggcattgattaatgtctcagatattcttatgtttttag---------------------------------------
 || | ||||||||||||| | ||||||||||| || ||  || | || |||||||| |||||| | || |||||||| ||||| ||  ||||||| ||||| ||||   |  || ||     | |       |||   |  | |   || ||| | | | ||   | |||      |  | |  |  |   ||                                       
ACTTTGCCAAATGTTTATCATTAATGCTGGTCCAGGTTTTAGGCTGCTCTGGAACACCGTGAAGACTTTTCTTGATCCAAAAACAACTTCCAAGATTCATgtaagtta--aaagaagttattttaatctgtttagagtatgatctccctgtttgttagaagtgtacactgtgctgttttctttacttctaacagaagtcataaggagtgattgtttttggaaattttcctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22935676|gb|BU571951.1|BU571951
EST:     GGAACACCGTGAAGTCCTTCCTTGATCCCAAAACGACCGCCAAGATACAT                         GTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAACAATTGACGCTAG
genomic: GGAACACTGTGAAGTCCTTCCTTGATCCCAAAACGACCGCCAAGATACATgtgagtttcc ... atgtttttagGTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAACAATTGACGCTAG
EST: gi|3172014|gb|AJ006545.1|AJ006545
EST:     GAACCACCGTGAAGTCCTTCCTTGATCCCAAAACGACCGCCAAGATACAT                         GTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAACAATTGACGCTAG
genomic: GAAC-ACTGTGAAGTCCTTCCTTGATCCCAAAACGACCGCCAAGATACATgtgagtttcc ... atgtttttagGTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAACAATTGACGCTAG