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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGTTTATGTGCCAACCAATCATTTATATATCGGTGACATCTTTTTGGTAAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttccttgctctctttttacctttgcctctactgctactgttcagagaaaagaaaatataacgcttcttatgttaattgctttcaatggtttggtt...

Basic information

species Zea mays
transcript GRMZM2G073415_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073415_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g36110.2 (Oryza sativa), 5'ss of exon 6
AGTGTTTATGTGCCAACCAATCATTTATATATCGGTGACATCTTTTTGGTAAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttccttgctctctttttacctttgcc-tctac-tgctactgttcagagaaaagaaaatataacgcttcttat--gttaattgctttcaatggtttggtt------------------------
||||| |||||||||||||||||| ||||||||||||||||||| ||||| |  ||    || ||||||||||| |||||||||||||| ||||| || ||||||||||||   |   ||||    || || | |   |||||    |        |   |||  |  | ||  |    ||  ||| || | | |  | |  |                         
AGTGTATATGTGCCAACCAATCATCTATATATCGGTGACATCTTCTTGGTTAGGTCTGAGGAGATTATAAGGCCGAATTTGTCCATTCGAGAAGGGATAGgttggttccttttccaaattttgaagttaccgtttgtgtgctaggtcttttctcctatccaattcagtgttttatcctagtacatttctcttattcatctaatcttatgctctttgtactttttacag

upper sequence: GRMZM2G073415_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA04G39490.1 (Glycine max), 5'ss of exon 6
AGTGTTTATGTGCCAACCAATCATTTATATATCGGTGACATCTTTTTGGTAAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttc-cttgctctctttttacctttgcctctactgctactgt-tcagagaaaagaaaatataacgcttcttatgttaattgctttcaatggtttggtt
||||||| ||| || || |||||| ||||||| ||||| || |||||||| || ||||  || |||||||| || ||| | |||||||| |||||||||||| ||||| ||| |  |   || |        |    || |  ||| ||    |  |       ||||  |   ||||   |    ||  |    | ||   
AGTGTTTTTGTCCCTACGAATCATCTATATATTGGTGATATATTTTTGGTTAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctctttcggttgattcattgccaagtaccttgtttatgtatctcctattatgctcgttaacaatgtatatggagagatattgtatctatatga--

upper sequence: GRMZM2G073415_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA06G15360.2 (Glycine max), 5'ss of exon 6
AGTGTTTATGTGCCAACCAATCATTTATATATCGGTGACATCTTTTTGGTAAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttcctt----gctctctttttacct------ttgcctctactg-ctac----tgttcag--agaaaagaaaatataacgcttctta-tgttaatt-gctttcaatggtttggtt-------------------------------------------------------------------------
||||||| ||| || || || ||| ||||||| ||||| || |||||||| || ||||  || |||||||| || ||| | |||||||| |||||||||||| |||||  |    | |   |  |||||        ||  | ||  |  |||    || ||    || || | | ||  |  | |  | | ||  |||  |   |   |  ||||  |                                                                         
AGTGTTTTTGTACCTACGAACCATCTATATATTGGTGATATATTTTTGGTTAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctcttttggttgattcattaccaagtacactgtttatataggttacatcatgctcgttcaggaatgtatatggagagatattgaatgaaaatcagaactttgtcatttgacttctgcatgttaaaattcttgaaccattatttgcatttcttctaattcaatagtgtatgttgttgctgatacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211010115|gb|FL453008.1|FL453008
EST:     AAACTCCMCCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTG                         AAATAATTGTTTCAGGAGGAATGACTATGCCACAGGTGATCACGTCACTGG
genomic: AAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttcct ... catgctacagAAATAATTGTTTCAGGAGGAATGACTATGCCACAGGTGATCACGTCACTGG
EST: gi|149096886|gb|EE182683.2|EE182683
EST:     CGGTGACATCTTTTTGGTAAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTG        
genomic: AAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttcct ... catgctacagA
EST: gi|94473616|gb|EB702574.1|EB702574
EST:     AAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTG                         AAATAATTGTTTCAGGAGGAATGACTATGCCACAGGTGATCACGTCACTGG
genomic: AAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttcct ... catgctacagAAATAATTGTTTCAGGAGGAATGACTATGCCACAGGTGATCACGTCACTGG
EST: gi|67012407|gb|CO441156.1|CO441156
EST:     CGGTGACATCTTTTTGGTAAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTG        
genomic: AAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttcct ... catgctacagA
EST: gi|60341304|gb|DN208277.1|DN208277
EST:     CGGTGACATCTTTTTGGTAAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTG        
genomic: AAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttcct ... catgctacagA
EST: gi|76291080|gb|DV030648.1|DV030648
EST:     CGGTGACATCTTTTTGGTAAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTG        
genomic: AAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttcct ... catgctacagA
EST: gi|149104749|gb|EE290203.2|EE290203
EST:     CGGTGACATCTTTTTGGTAAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTG        
genomic: AAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttcct ... catgctacagA
EST: gi|60347004|gb|DN213977.1|DN213977
EST:     CGGTGACATCTTTTTGGTAAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTG        
genomic: AAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttcct ... catgctacagA
EST: gi|1072295|gb|H89383.1|H89383
EST:     ACTCCACCAACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTG                         AAATAATTGTTTCAGGAGGAATGACTATGCCACAGGTGATCACGTCACTGG
genomic: ACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttcct ... catgctacagAAATAATTGTTTCAGGAGGAATGACTATGCCACAGGTGATCACGTCACTGG
EST: gi|78121574|gb|DV539958.1|DV539958
EST:     AAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTG                         AAATAATTGTTTCAGGAGGAATGACTATGCCACAGGTGATCACGTCACTGG
genomic: AAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttcct ... catgctacagAAATAATTGTTTCAGGAGGAATGACTATGCCACAGGTGATCACGTCACTGG
EST: gi|88746383|gb|DY530524.1|DY530524
EST:     AAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTG                         AAATAATTGTTTCAGGAGGAAGGAGTATGCCACAGGTGATCACGTCACTGG
genomic: AAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttcct ... catgctacagAAATAATTGTTTCAGGAGGAATGACTATGCCACAGGTGATCACGTCACTGG
EST: gi|211119697|gb|FL001617.1|FL001617
EST:     CGGTGACATCTTTTTGGTAAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTG        
genomic: AAACTCCACCGACATTATAAGGCCCAATTTGTCCATTCGTGAAGGCATTGgttggttcct ... catgctacagA