1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
AATGAGTACGGCGTTTGGGAGATTTTCCTGCCTAACAATGCTGATGGTTCCCCTGCTATTCCTCATGGCTCACGTGTAAAGgtagattttctgattggttagtttgggagtgaaaacattcttcagattgtctctgctaaagggacttcttttttttttctctccctattgtttctag
species | Zea mays |
transcript | GRMZM2G073054_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTAACAATGCTGATGGTTCCCCTGCTATTCCTCATGGCTCACGTGTAAAG ATACGGATGGACACACCATCTGGTGTTAAGGATTCCATTCCTGCCTGGATCEST: gi|211263679|gb|FL032932.1|FL032932
genomic: CTAACAATGCTGATGGTTCCCCTGCTATTCCTCATGGCTCACGTGTAAAGgtagattttc ... ttgtttctagATACGGATGGACACACCATCTGGTGTTAAGGATTCCATTCCTGCCTGGATC
EST: CTAACAATGCTGATGGTTCCCCTGCTATTCCTCATGGCTCACGTGTAAAG ATACGGATGGACACACCATCTGGTGTTAAGGATTCCATTCCTGCCTGGATCEST: gi|87155797|gb|DY400586.1|DY400586
genomic: CTAACAATGCTGATGGTTCCCCTGCTATTCCTCATGGCTCACGTGTAAAGgtagattttc ... ttgtttctagATACGGATGGACACACCATCTGGTGTTAAGGATTCCATTCCTGCCTGGATC
EST: CTAACAATGCTGATGGTTCCCCTGCTATTCCTCATGGCTCACGTGTAAAG ATACGGATGGACACACCATCTGGTGTTAAGGATTCCATTCCTGCCTGGATCEST: gi|26558524|gb|CA830759.1|CA830759
genomic: CTAACAATGCTGATGGTTCCCCTGCTATTCCTCATGGCTCACGTGTAAAGgtagattttc ... ttgtttctagATACGGATGGACACACCATCTGGTGTTAAGGATTCCATTCCTGCCTGGATC
EST: CTAACAATGCTGATGGTTCCCCTGCTATTCCTCATGGCTCACGTGTAAAG ATACGGATGGACACACCATCTGGTGTTAAGGATTCCATTCCTGCCTGGATCEST: gi|67022129|gb|CO450878.1|CO450878
genomic: CTAACAATGCTGATGGTTCCCCTGCTATTCCTCATGGCTCACGTGTAAAGgtagattttc ... ttgtttctagATACGGATGGACACACCATCTGGTGTTAAGGATTCCATTCCTGCCTGGATC
EST: CTAACAATGCTGATGGTTCCCCTGCTATTCCTCATGGCTCACGTGTAAAG ATACGGATGGACACACCATCTGGTGTTAAGGATTCCATTCCTGCCTGGATC
genomic: CTAACAATGCTGATGGTTCCCCTGCTATTCCTCATGGCTCACGTGTAAAGgtagattttc ... ttgtttctagATACGGATGGACACACCATCTGGTGTTAAGGATTCCATTCCTGCCTGGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGAGTACGGCGTTTGGGAGATTTTCCTGCCTAACAATGCTGATGGTTCCCCTGCTATTCCTCATGGCTCACGTGTAAAGgtagattttctgattggttagtttgggagtgaaaacattcttcagattgtctctgctaaagggacttcttttttttttctctccctattgtttctag
- - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - GCTGAT