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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCGTGGGGAAAGAATGTTATTCTTGTGGGAGGGAAAAGTGATCAACCTTATGACAAGATATCAGgtttgcctctgctatttaatatcctaaagtgcatcagtatgtgttgttcatctgattatcggcagaacttccaacagaaacaattaggaattcatcatttgttctactgcag

Basic information

species Zea mays
transcript GRMZM2G070553_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070553_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g43590.4 (Oryza sativa), 5'ss of exon 7
GTTTCGTGGGGAAAGAATGTTATTCTTGTGGGAGGGAAAAGTGATCAACCTTATGACAAGATATCAGgtttgcctctgctatttaatatcctaaagtgcatcagtatg-tgttgttcatctgattatcggcagaacttccaacagaaacaattaggaattcatcatttgttctactgcag
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GTTCCATGGGGGAAGAATGTCATTCTTGTTGGAGGGAAAACTGATCCACCTTCTGACCGGATATCAGgttagacagcactgttagattctcaaaagaatgtgaattttcttttggtcagatgctttactttccaatttgcagtagaaata-ttcgtaact--tcatttcttttattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148938118|gb|EC882387.2|EC882387
EST:     TGTTATTCTTGTGGGAGGGAAAAGTGATCAACCTTATGACAAGATATCAG                         TATGGACCTTCAATACAGAGAGTGAGCTCTGGTCTCATATGGAAGCGAAGG
genomic: TGTTATTCTTGTGGGAGGGAAAAGTGATCAACCTTATGACAAGATATCAGgtttgcctct ... tctactgcagTATGGACCTTCAATACAGAGAGTGAGCTCTGGTCTCATATGGAAGCGAAGG