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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctccctgtcgctgtgtatatgtgcatacagcggtgtgctgcagctctttcctgtgacactttgtctaaccatcttaaaaaccacctatattcattttgtgaag

Basic information

species Zea mays
transcript GRMZM2G070422_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g23810.2 (Oryza sativa), 5'ss of exon 7
GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctccctgtcgctgtgtatatgtgcatacagcggtgtgctgcagctctttcctgtgacactttgtctaaccatcttaaaaaccacctatattcattttgtgaag
||||||| ||| ||||| | |||||| |||||||||||||||||  | ||||||||||| |||||||| ||||||||| | |  | ||| |  | |   | ||||| ||| ||   ||| || |  | ||  |  | ||   ||       || || ||  | ||||||  |   |||   |   
GAAGTTGCTGAGTCAGTCAAGAATGACTTTGGCAGCATTGACATTTTGGTGCATTCTCTAGCTAATGGTCCAGAGgtatagtgcctctgcctatattcctctgtgcttactgcta-gtgatgaaattattgtccat-acgtgttacgctttcaact-aatgatcacctacctctgtttgaag---

upper sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA08G45990.1 (Glycine max), 5'ss of exon 7
GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctccctgtcgctgtgtatatgtgcatacagcggtgtgctgcagctctttcctgtgac--actttgtctaaccatcttaaaaaccacctatattcattttgtgaag
||||||| |||||| || | ||| ||||||||||  || |||||||| ||||| || ||||||||||| |||||||||  |      ||  | |   | |   ||| |       |||  |  |||| |  |    |    ||||||| | |                                   
GAAGTTGCTGAATCTGTCAAGAAGGATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAGgtattacaataatgaagtttcttgt---tgcctc-----atgtcttttagctttaactaacgttcaactttgttttag----------------------------------

upper sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA18G31780.1 (Glycine max), 5'ss of exon 6
GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctccctgtcgctgtgtatatgtgcatacagcggtgtgctgcagctctttcctgtgac--actttgtctaaccatcttaaaaaccacctatattcattttgtgaag
||||||| |||||| || | ||| ||||||||||  || |||||||| ||||| || ||||||||||| |||||||||  |            ||   || | |   | |  |  |||  |  |||| |  |         ||||||| ||                                    
GAAGTTGCTGAATCTGTCAAGAAAGATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAGgtattaatattacaataatgaa-atttcttgttgcctca-tgtcttttagctttaactgacactcaactttgtttag-----------------------------------

upper sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 7
lower sequence: AT2G05990.1 (Arabidopsis thaliana), 5'ss of exon 6
GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctccctgtcgctgtgtatatgtgcatacagcg-gtgtgctgcagctctttcctgtgacactttgtctaaccatcttaaaaaccacctatattcattttgtgaag
|||| || |||||  ||||  || |||||||| ||||||||||| || || ||||| ||||| ||||||||||||||| |     | | ||| |   |||   ||  |||||   |||   ||    | ||   |   |    ||  ||||   | || |    ||  |   || |          
GAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTGACATTCTTGTCCATTCCCTTGCAAATGGCCCAGAGgtagagaactcgtatcgat---tat---tggttacagtaagtgcattg----tgttgtatacaaactatttcctaatggtgttca----catgtgggtttag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211267877|gb|FL003942.1|FL003942
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|32914780|gb|CF019592.1|CF019592
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCGAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|67017641|gb|CO446390.1|CO446390
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAAGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|31356384|gb|CD440741.1|CD440741
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|6526869|gb|AW216132.1|AW216132
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|31361470|gb|CD445827.1|CD445827
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|67018992|gb|CO447741.1|CO447741
EST:     TTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCCAGAG                         -TAACGAAGCCTTTGTTGGAAACCTCAAGAAAGAG-CTATCTTGCNGCAA
genomic: TTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCC-AGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAA-GAGGCTATCTTGCGGCAA
EST: gi|67019739|gb|CO448488.1|CO448488
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAAGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|7162427|gb|AW520049.1|AW520049
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|84980240|gb|DW530589.1|DW530589
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|71766309|gb|DR964246.1|DR964246
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|31354494|gb|CD438851.1|CD438851
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|31353471|gb|CD437828.1|CD437828
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTCGT-GGAAACCTCAAGAAGAGGCTATCTTGCGGCAAT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTT-GTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAAT