1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGAACAAGGCATGGTTGATGAAGCTCAAAAAGCTTTGGAAGAGGCAGAAGCTCTGAAAAAGgtagtcaattagccataatttcgtattttgatgttcattttaccagtttaggtagtttttttacttctttttaccttgctgtgagctgtctcagacaagggtttatgacattggcagtattctttttatcttgtttaatgaaccttgactgatggataatttggttttgactattattag
species | Zea mays |
transcript | GRMZM2G069916_T04 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGGTTGATGAAGCTCAAAAAGCTTTGGAAGAGGCAGAAGCTCTGAAAAAG CTGGGCGC-ACGTTCAGAGCCACCTTCAGACCCTTCGAA-TATACTGCTGCEST: gi|32832751|gb|CD972429.1|CD972429
genomic: TGGTTGATGAAGCTCAAAAAGCTTTGGAAGAGGCAGAAGCTCTGAAAAAGgtagtcaatt ... ctattattagCTGG-CGCCACGTTCAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGC
EST: TGGTTGATGAAGCTCAAAAAGCTTTGGAAGAGGCAGAAGCTCTGAAAAAG CTGGCGCCACGTTCAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCTEST: gi|71312972|gb|DR793008.1|DR793008
genomic: TGGTTGATGAAGCTCAAAAAGCTTTGGAAGAGGCAGAAGCTCTGAAAAAGgtagtcaatt ... ctattattagCTGGCGCCACGTTCAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCT
EST: TGGTTGATGAAGCTCAAAAAGCTTTGGAAGAGGCAGAAGCTCTGAAAAAG CTGGCGCCACGTTCAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCTEST: gi|87157020|gb|DY401809.1|DY401809
genomic: TGGTTGATGAAGCTCAAAAAGCTTTGGAAGAGGCAGAAGCTCTGAAAAAGgtagtcaatt ... ctattattagCTGGCGCCACGTTCAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCT
EST: TGGTTGATGAAGCTCAAAAAGCTTTGGAAGAGGCAGAAGCTCTGAAAAAG CTGGCGCCACGTTCAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCT
genomic: TGGTTGATGAAGCTCAAAAAGCTTTGGAAGAGGCAGAAGCTCTGAAAAAGgtagtcaatt ... ctattattagCTGGCGCCACGTTCAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAACAAGGCATGGTTGATGAAGCTCAAAAAGCTTTGGAAGAGGCAGAAGCTCTGAAAAAGgtagtcaattagccataatttcgtattttgatgttcattttaccagtttaggtagtttttttacttctttttaccttgctgtgagctgtctcagacaagggtttatgacattggcagtattctttttatcttgtttaatgaaccttgactgatggataatttggttttgactattattag
- - - - - - - - - TGAAGC
- - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - AGAAGC