Sequence
atgc intronic sequence ATGC exonic sequenceGTTGTTCCAGTTGCTTCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAGgtagccatgctcttcttttgaaaaagtgaaaaaaggagtcagcataccatacttattgtattggtagattgatagattgcatgcagcttttcctgaattgacatatacttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G069758_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os12g40830.3 (Oryza sativa), 5'ss of exon 7
GTTGTTCCAGTTGCTTCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAGgtagccatgctcttcttttgaaaaagtgaaaaaaggagtcagcataccatacttattgtattggtagattgatagattgcatgcagcttttcctg---aattgacatatacttacag
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GTTGTCCCAGTTGCTACAATGCTTACACCTAACCAATTTGAAGTTGAACTACTCACTGGTTTAAGgtagtcatgctcttcttttg-----gtaaaaaagaaaacaagtaattc---tttgttatgttcatataccacaaaaacttatctagttatcttagcacaattatcaca---------
upper sequence: GRMZM2G069758_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv14s0006g01660.t01 (Vitis vinifera), 5'ss of exon 7
GTTGTTCCAGTTGCTTCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAGgtagccatgctcttcttttgaaaaagtgaaaaaaggagtcagcataccatacttattgtattggtagattgatagattgcatgcagcttttcctgaattgacatatacttacag
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GTTGTTCCAGTTGCTTCAATGTTGACTCCTAATCAGTTTGAAGCAGAACTACTAACTGGGTTCAGgtattt-tgtggtactatatgataat--attcttgaatctgaccttgttcacttcatgttctc-tatactttcggatatctccttgctgcactaaattctttat----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60397480|gb|DN230296.1|DN230296EST: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAG GATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGC
genomic: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAGgtagccatgc ... atacttacagGATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGTTCCAGTTGCTTCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAGgtagccatgctcttcttttgaaaaagtgaaaaaaggagtcagcataccatacttattgtattggtagattgatagattgcatgcagcttttcctgaattgacatatacttacag
- - - - - - - - - - - - - - - - - - TTGAAG