Sequence
atgc intronic sequence ATGC exonic sequenceAAAAACCATTGGAGGAACTGCATATAGTCGTTGATGCAGGGAATGGTGCTGGTGGTTTTTTTGTGgtaatgtgttacactttcaaagtcctctagcaatgtacatttttagcgttggtttcatttgttatgttgtctatcattaccttcgatcaaatggttgatc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G069676_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os07g26610.1 (Oryza sativa), 5'ss of exon 8
AAAAACCATTGGAGGAACTGCATATAGTCGTTGATGCAGGGAATGGTGCTGGTGGTTTTTTTGTGgtaatgtgttacactttcaaagtcctctagcaatgtacatttttagcgttggtttcatttgttatgtt--gtctatcattaccttcgatcaaatggttgatc
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AAAAACCACTGGAGGGACTGCACATAGTCGTGGATGCAGGGAATGGAGCAGGTGGCTTTTTTGTGgtaatccctt-tacttccatatttccatta-attgt---ttttcagcaatg-caccattttttgtttgaagttcatgttgttcttggatcag----------
upper sequence: GRMZM2G069676_T03 (Zea mays), 5'ss of exon 8
lower sequence: Vv13s0019g04370.t01 (Vitis vinifera), 5'ss of exon 8
AAAAACCATTGGAGGAACTGCATATAGTCGTTGATGCAGGGAATGGTGCTGGTGGTTTTTTTGTGgtaatgtgttacactttcaaagtcctctagcaatgtacatttttagcgttggtt--tcatttgttatgttgt--ctatcattaccttcgatcaaatggttgatc----
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AGAGGCCATTGGAGGGGTTGCATATAGTTGTTGATGCAGGGAATGGAGCAGGAGGATTTTTTGCTgtag---gtttcattcaca---ctctttact--tcaacatttttagcattttttcctcaggtgtaaggatataactgtaggaaattttctgaaagcattttttaatatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78112842|gb|DV531236.1|DV531236EST: AACTGCATATAGTCGTTGATGCAGGGAATGGTGCTGGTGGNNNNNNNGTG GATAAGGTACTCAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTT
genomic: AACTGCATATAGTCGTTGATGCAGGGAATGGTGCTGGTGGTTTTTTTGTGgtaatgtgtt ... tttgtttcagGATAAGGTACTCAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAAACCATTGGAGGAACTGCATATAGTCGTTGATGCAGGGAATGGTGCTGGTGGTTTTTTTGTGgtaatgtgttacactttcaaagtcctctagcaatgtacatttttagcgttggtttcatttgttatgttgtctatcattaccttcgatcaaatggttgatc
- - - - - - - - - - - - - - - - - - - - - - - - TGGTGG