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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCTGGAGCATCATCTATTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaaggcaatcgatcttgtagtggatatacttttttagtcatgttgcacttgttattcataagatggatttgatttgttaggtgcctttggttttcagcgaaggaccttcttgtaacatattaactgcttttgcag

Basic information

species Zea mays
transcript GRMZM2G068277_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068277_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g02690.1 (Oryza sativa), 5'ss of exon 10
CTATCTGGAGCATCATCTATTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaaggcaatcgatcttgtagtg---gatat-acttttttagtcatgttgcacttgttattcataagatggatttgatttgttaggtgcctttggttttcagcgaaggaccttcttgtaacatattaactgctt-ttgcag
|||||| ||||||||||| ||||||||||| || |||||||| |||||||| ||||| || ||||||||||| ||  |    ||| ||| |   |      || || |  | || ||| | || | || | || |    || |  |||   || ||||  |||| |||  |||||||  ||   | || ||   || |||| || | || ||||||
CTATCTTGAGCATCATCTCTTGCGTGACACCTATACCAAGGAAACAGTACCGGCACTACATAGGATCAGgtaaagccagtttaattgatttaaaaaaaactgacatgatatcttgagttaagtggtacatcttctc---aaaacagatccaatatgttgagtgcttttc-ttttcaggaaaatgcatttttt--acttatttaccgtttcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211432853|gb|FL453388.1|FL453388
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAADTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|60400409|gb|DN233216.1|DN233216
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|211359393|gb|FL440514.1|FL440514
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAANTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|71428336|gb|DR809386.1|DR809386
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|60401584|gb|DN234391.1|DN234391
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|71443220|gb|DR824270.1|DR824270
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|76281959|gb|DV021527.1|DV021527
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|71443221|gb|DR824271.1|DR824271
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAG
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAG
EST: gi|78122195|gb|DV540579.1|DV540579
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|211426623|gb|FL412861.1|FL412861
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCA
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCA
EST: gi|5895704|gb|AW036950.1|AW036950
EST:     TTACGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|50331676|gb|CO526802.1|CO526802
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|110488821|gb|EE012728.1|EE012728
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|45568053|gb|CK985878.1|CK985878
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|148948940|gb|EC894359.2|EC894359
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|110504829|gb|EE017437.1|EE017437
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATTTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|60347346|gb|DN214319.1|DN214319
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|50324448|gb|CO519574.1|CO519574
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|211359065|gb|FL430712.1|FL430712
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAADTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|44900277|gb|CK826822.1|CK826822
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|211478808|gb|FL379717.1|FL379717
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
EST: gi|74237081|gb|DT644995.1|DT644995
EST:     TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAG                         GAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC
genomic: TTGCGTGACACTTACACCAAGGACACAGTACCAGCACTGCACAGGATCAGgtatagttaa ... gcttttgcagGAAGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGC