1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGATATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAGgtttggttctgtcagctctgtttatttagcttgatccaaacacagaaggtcacttctagattaactgttattttgcatgtttcatgatgtgttgtcatgt...
species | Zea mays |
transcript | GRMZM2G066496_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAG CATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAATEST: gi|67022635|gb|CO451384.1|CO451384
genomic: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAGgtttggttct ... aaatttgcagCATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAAT
EST: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAG CATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAATEST: gi|32830465|gb|CD970143.1|CD970143
genomic: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAGgtttggttct ... aaatttgcagCATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAAT
EST: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAG CATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAATEST: gi|32804124|gb|CD956360.1|CD956360
genomic: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAGgtttggttct ... aaatttgcagCATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAAT
EST: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAG CATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAATEST: gi|32859901|gb|CD999582.1|CD999582
genomic: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAGgtttggttct ... aaatttgcagCATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAAT
EST: ATCGATATTGCAACACATATAGTT-TTTAAGACGACGGGCCAAAAAGAAG CATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAATEST: gi|31558031|gb|CD527243.1|CD527243
genomic: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAGgtttggttct ... aaatttgcagCATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAAT
EST: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGNCCAAAAAGAAG CATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAATEST: gi|148954707|gb|EC900159.2|EC900159
genomic: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAGgtttggttct ... aaatttgcagCATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAAT
EST: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAG CATGCTTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAAEST: gi|32801615|gb|CD953851.1|CD953851
genomic: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAGgtttggttct ... aaatttgcagCATGC-TTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAA
EST: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAG CATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAATEST: gi|18164129|gb|BM333968.1|BM333968
genomic: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAGgtttggttct ... aaatttgcagCATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAAT
EST: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAG CATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAATEST: gi|118406764|gb|EH038212.1|EH038212
genomic: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAGgtttggttct ... aaatttgcagCATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAAT
EST: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAG CATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAATEST: gi|89759755|gb|DY688471.1|DY688471
genomic: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAGgtttggttct ... aaatttgcagCATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAAT
EST: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAG CATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAATEST: gi|60359682|gb|DN226655.1|DN226655
genomic: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAGgtttggttct ... aaatttgcagCATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAAT
EST: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAG CATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAAT
genomic: ATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAGgtttggttct ... aaatttgcagCATGCTTTACATAGAGACAGCCGATCGGCCTGGCCTACTTCTTGAGATAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGATATCGATATTGCAACACATATAGTTGTTGAAGACGACGGGCCAAAAAGAAGgtttggttctgtcagctctgtttatttagcttgatccaaacacagaaggtcacttctagattaactgttattttgcatgtttcatgatgtgttgtcatgt
- - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG