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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCAACAGCAGTTAAGGGTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAGgtatatgcctgcctatattcttttaatcttaatttacaaatgtgtcaaacgtgttccataaaactaggacaatatttattgttgataaagaatggggaca...

Basic information

species Zea mays
transcript GRMZM2G064023_T04
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064023_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g33240.3 (Oryza sativa), 5'ss of exon 6
GGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCAACAGCAGTTAAGGGTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAGgtatatgcctgcctatattcttttaatcttaatttacaaatgtgtcaaacgtgttccataaaa-----ctaggacaatatttattgttgataaagaatggggaca
|||||||||||||||||||||||| |||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||||||| || ||||| |     |  |  |  |  |  |||| |  || |  |||   |  |   | | |||  |||      |     || |    ||||||||  || | | |    
GGGTCTCTCGATTCCAGAGTGCCAGAAAGTGCTGCCAACAGCAATTAAAGGTGGAGAACCTTTGCCGGAGGGTCTCCTTTGGCTTCTTTTGACTGGAAAGgtttggcttttgcctttcttatagaatccttgttga--aatagtttgatgatctgccaataaagttccttccagaaacagggcttgttgattcagtaggagc---

upper sequence: GRMZM2G064023_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 7
GGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCAACAGCAGTTAAGGGTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAGgtatatgcctgcctatattcttttaatcttaatttacaaatgtgtcaaacgtgttccataaaactaggacaatattta-ttgttgataaagaatgg-ggaca--------------
|||||||||||||||||||||||| ||||||||||| ||||||||||| | ||| || ||||||||||||||||| ||||||||||||||||| || ||||| |  | || | | | ||    |  | ||   ||  |||  ||     | |||||     |  |  | |   |||||  || |  |   || ||   |  |              
GGGTCTCTCGATTCCAGAGTGCCAGAAAGTGCTGCCGACAGCAGTTAAAGATGGGGAGCCTTTGCCTGAGGGTCTACTTTGGCTTCTTTTGACCGGAAAGgttt--ggcttcttttgtttaactgttttt--cttgtaaacttggttttcctgttctt---atttttgtcggcatttagctgctagtgtggactgataggtatttgtttgtttcag

upper sequence: GRMZM2G064023_T04 (Zea mays), 5'ss of exon 7
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 7
GGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCAACAGCAGTTAAGGGTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAGgtatatgcctgcctatattcttttaatcttaatttacaaatgtgtcaaacgtgttccataaaactaggacaatatttattgttgataaagaatggggaca--------
|||| | || || || || |||||||||||  | ||||  |||      ||||| || ||| ||||||||||||| |||||||||||||||||||| |||||   |   ||   | |        |    |  |||||         || |  |   | || |  ||||  | |||   |||      | ||| ||   |        
GGGTATGTCTATCCCTGAATGCCAAAAAGTATTACCAAATGCAACACCTGGTGGAGAGCCTCTGCCTGAGGGTCTGCTTTGGCTTCTTTTGACAGGAAAGgtgggtttgtgttaaaaac------aaaagacattacaggatacctgaatgaat--gaaaataggaggaagacattgcatgtcatatgaaaattggtttatgaggttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4609628|gb|AI600467.1|AI600467
EST:     GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAGgtatatgcct ... cttgttttagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|149090362|gb|EE179668.2|EE179668
EST:     GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAGgtatatgcct ... cttgttttagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|149082725|gb|EE171943.2|EE171943
EST:     GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAGgtatatgcct ... cttgttttagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|149077813|gb|EE166538.2|EE166538
EST:     GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAGgtatatgcct ... cttgttttagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|8103179|gb|AW927835.1|AW927835
EST:     GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAGgtatatgcct ... cttgttttagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|213174510|gb|FM184748.1|FM184748
EST:     GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAGgtatatgcct ... cttgttttagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|211399063|gb|FL099822.1|FL099822
EST:     GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAGgtatatgcct ... cttgttttagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|71450120|gb|DR831170.1|DR831170
EST:     GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAGgtatatgcct ... cttgttttagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|32859373|gb|CD999054.1|CD999054
EST:     GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAG                         GTCCCAACCAAAGAGCAAGGTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAGgtatatgcct ... cttgttttagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|76287895|gb|DV027463.1|DV027463
EST:     GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GTGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACAGGGAAGgtatatgcct ... cttgttttagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC