1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GTCCCAACCAAAGATCAAGTTGATGCTCTATCAAAAGAATTGCTTGCGCGCTCAACTGTCCCAGgtattttgatcacaccgctggctacttgtgttattgttttgaccaattaaatctacaaatcatctgaatgaactgatgctgatgtctccctgttctaaag...
species | Zea mays |
transcript | GRMZM2G063909_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCAAGTTGATGCTCTATCAAAAGAATTGCTTGCACGCTCAACTGTCCCAG CTCATGTCTATAAGGTAATAGATGCTCTCCCAGTAACTGCACATCCTATGAEST: gi|71303469|gb|DR787844.1|DR787844
genomic: TCAAGTTGATGCTCTATCAAAAGAATTGCTTGCGCGCTCAACTGTCCCAGgtattttgat ... atccttgcagCTCATGTCTATAAGGTAATAGATGCTCTCCCAGTAACTGCACATCCTATGA
EST: CAAGTTGATGCTCTATCAAAAGAATTGCTTGCGCGCTTCA-CTGTCCCAG CTCATGTCTATNAGGGAATAGATGCEST: gi|78088374|gb|DV516767.1|DV516767
genomic: CAAGTTGATGCTCTATCAAAAGAATTGCTTGCGCGCT-CAACTGTCCCAGgtattttgat ... atccttgcagCTCATGTCTATAAGGTAATAGATGC
EST: TCAAGTTGATGCTCTATCAAAAGAATTGCTTGCGCGCTCAACTGTCCCAG CTCATGTCTATAAGGTAATAGATGCTCTCCCAGTAACTGCACATCCTATGAEST: gi|148965958|gb|EE016876.2|EE016876
genomic: TCAAGTTGATGCTCTATCAAAAGAATTGCTTGCGCGCTCAACTGTCCCAGgtattttgat ... atccttgcagCTCATGTCTATAAGGTAATAGATGCTCTCCCAGTAACTGCACATCCTATGA
EST: TCAAGTTGATGCTCTATCAAAAGAATTGCTTGCGCGCTCAACTGTCCCAG CTCATGTCTATAAGGTAATAGATGCTCTCCCAGTAACTGCACATCCTATGA
genomic: TCAAGTTGATGCTCTATCAAAAGAATTGCTTGCGCGCTCAACTGTCCCAGgtattttgat ... atccttgcagCTCATGTCTATAAGGTAATAGATGCTCTCCCAGTAACTGCACATCCTATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCCAACCAAAGATCAAGTTGATGCTCTATCAAAAGAATTGCTTGCGCGCTCAACTGTCCCAGgtattttgatcacaccgctggctacttgtgttattgttttgaccaattaaatctacaaatcatctgaatgaactgatgctgatgtctccctgttctaaag
- - - - - - - - - - - - - - - - AAAGAA