Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGGGCTGGAGTACCTGCACGAGGCGGCGGCGCCGCGCATCCTCCACCGCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgttcagtcacacctggttggtgcctggctttgctactgaagcttctcgaggttttgattctcgatctatgcgtgacgtgagtgcag

Basic information

species Zea mays
transcript GRMZM2G063897_T03
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149079247|gb|EE168216.2|EE168216
EST:     GCGACATCAAGTCCACCAACATCCTCCTGGGCGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|101381689|gb|EB812902.1|EB812902
EST:     GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|148965766|gb|EE016644.2|EE016644
EST:     TGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: TGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|149074192|gb|EE162555.2|EE162555
EST:     ACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: ACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|76011609|gb|DT938779.1|DT938779
EST:     GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|74239346|gb|DT647260.1|DT647260
EST:     GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|148965161|gb|EE015973.2|EE015973
EST:     GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|148944900|gb|EC890059.2|EC890059
EST:     GACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|148941684|gb|EC886631.2|EC886631
EST:     AAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCTTGATGAACGACGGCGTGACCAGC
genomic: AAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|71330865|gb|DR802230.1|DR802230
EST:     GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|148999858|gb|EE036888.2|EE036888
EST:     CGACATCAAGTCCACCAACATCCTTCTGGACGACAAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: CGACATCAAGTCCACCAACATCCTCCTGGACGAC-AAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|148965208|gb|EE016014.2|EE016014
EST:     ACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: ACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|148930789|gb|EC873135.2|EC873135
EST:     GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|78086185|gb|DV514578.1|DV514578
EST:     GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|78079839|gb|DV508251.1|DV508251
EST:     GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|148958131|gb|EC904330.2|EC904330
EST:     GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|148974269|gb|EE025038.2|EE025038
EST:     GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|149009748|gb|EE154084.2|EE154084
EST:     GGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|78123256|gb|DV541640.1|DV541640
EST:     GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|76927186|gb|DV171168.1|DV171168
EST:     GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCATGATGAACGACGGCGTGATCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|88752061|gb|DY536202.1|DY536202
EST:     ACATCAAGTCCACCAACATCTTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: ACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|71758257|gb|DR956194.1|DR956194
EST:     GCGACATCAAGTCCACCAACATCCTCCTAGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCNTGATGAACGACGGCGTGACCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|149089434|gb|EE178675.2|EE178675
EST:     GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|149087795|gb|EE287125.2|EE287125
EST:     GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GCGACATCAAGTCCACCAACATCCTCCTGGACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|149088849|gb|EE177980.2|EE177980
EST:     TCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: TCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
EST: gi|86474993|gb|DY241363.1|DY241363
EST:     GACGACAAGTTCAGAGCCAAG                         ATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC
genomic: GACGACAAGTTCAGAGCCAAGgttgtttgtt ... gtgagtgcagATCACTGACCTCGGCATGGCCAAGTGCCTGATGAACGACGGCGTGACCAGC