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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAACAGCAGTTAAGGGCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAGgtatatgccttcctatattcattcaatttaaatttaaaaatgtgccaaatgtgttctgttaagaatacatttctcgcctatctttgtatttccattcctttaatatattttagtttttttcccaattctcatcctatttctataagttttaaggctgtgttttttttcttgtttcag

Basic information

species Zea mays
transcript GRMZM2G063851_T04
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063851_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g33240.3 (Oryza sativa), 5'ss of exon 6
GGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAACAGCAGTTAAGGGCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAGgtatatgccttcctatattcattcaatttaaatttaaaaatgtgccaaatgtgttctgttaagaatacatttctcgcctatctttgtatttccattcctttaatatattttagtttttttcccaattctcatcctatttctataagttttaaggctgtgttttttttcttgtttcag
||| ||||| |||||||| ||||| |||||||||||||||||| |||| || || ||||||||||| |||||||||||||||||||||||||| || ||||| |     || |  |  | ||  |||     || ||| | ||   |    || ||||  || ||   | |||   ||       |   ||   ||  || | ||                                                                        
GGGTCTCTCGATTCCAGAGTGCCAGAAAGTGCTGCCAACAGCAATTAAAGGTGGAGAACCTTTGCCGGAGGGTCTCCTTTGGCTTCTTTTGACTGGAAAGgtttggcttttgcctttcttatagaatccttgttgaaata-gtttga----tgatctgccaataa---agttccttccagaaacagggctt--gttgattcagtaggagc-------------------------------------------------------------------

upper sequence: GRMZM2G063851_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 7
GGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAACAGCAGTTAAGGGCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAGgtatatgccttcctatattcattcaatttaaatttaaaaatgtgccaaatgtgttctgttaagaatacatttctcgcctatctttgtatttccattcctttaatatattttagtttttttcccaattctcatcctatttctataagttttaaggctgtgttttttttcttgtttcag
||| ||||| |||||||| ||||| ||||||||||| ||||||||||| |  || || ||||||||||||||||| ||||||||||||||||| || ||||| |  | |||| | | || |     |||   | ||||  ||       |||  |   ||  |    |||||  |  |||  | || | |   |    |||  | | ||| ||                                                                
GGGTCTCTCGATTCCAGAGTGCCAGAAAGTGCTGCCGACAGCAGTTAAAGATGGGGAGCCTTTGCCTGAGGGTCTACTTTGGCTTCTTTTGACCGGAAAGgttt--ggcttcttttgtttaactgtttttcttgtaaacttggttttcctgttcttatttttgtcggcatttagctgctag-tgtggactgataggtatttgtt-tgtttcag----------------------------------------------------------------

upper sequence: GRMZM2G063851_T04 (Zea mays), 5'ss of exon 7
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 7
GGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAACAGCAGTTAAGGGCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAGgtatatgccttcctatattcattcaatttaaatttaaaaatgtgccaaatgtgttctgttaagaatacatttctcgcctatctttgtatttccattcctttaatatattttagtttttttcccaattctcatcctatttctataagttttaaggctgtgttttttttcttgtttcag
|||  | || || || ||||||||||||||  | ||||  |||      || || || ||| ||||||||||||| ||||||||||||||||| || |||||   |   |    |     |  |||   | |||  |  ||   |  ||||  |     || ||  | |    | || | ||    |||    |||  ||||  |  |||                                                                   
GGGTATGTCTATCCCTGAATGCCAAAAAGTATTACCAAATGCAACACCTGGTGGAGAGCCTCTGCCTGAGGGTCTGCTTTGGCTTCTTTTGACAGGAAAGgtgggtttgtgttaa-----aaacaaaagacattacaggatac-ctgaatgaatgaaaataggagga-agacattgcatgtc---atatgaaaattggtttatgaggttt-------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51592469|gb|CV071615.1|CV071615
EST:     GCGGCGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAGgtatatgcct ... cttgtttcagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|211131287|gb|FL186946.1|FL186946
EST:     GCGGCGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAGgtatatgcct ... cttgtttcagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|21480820|gb|BQ577503.1|BQ577503
EST:     GCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAGgtatatgcct ... cttgtttcagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|211131286|gb|FL186945.1|FL186945
EST:     GCGGCGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAGgtatatgcct ... cttgtttcagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|32868179|gb|CF007861.1|CF007861
EST:     GCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAG                         GTCCCAACCAAAGAGCAAGGTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAGgtatatgcct ... cttgtttcagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|78109451|gb|DV527867.1|DV527867
EST:     GCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAGgtatatgcct ... cttgtttcagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|67040702|gb|CO466957.1|CO466957
EST:     GCGGCGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAGgtatatgcct ... cttgtttcagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
EST: gi|74035022|gb|DT535512.1|DT535512
EST:     GCGGCGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAAATTGCTTTGCGC
genomic: GCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAGgtatatgcct ... cttgtttcagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAA-TTGCTT-GCGC