Sequence
atgc intronic sequence ATGC exonic sequenceGGTGAGGCGTTATTCCAGACTCACGAAAACTTGGAACATCTGGCTATGATGGAGAGAGTTCTTGGACCTTTGCCGTACCATATGCTTAAGAGGGCAGAgtatgttccataccaatgcaagtctgaacatcaatgctgtgaggtctggtcgatatcttgtcttactaatccttgtttgtagtcggcactctgacaaatacatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G063792_T05 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g27520.1 (Oryza sativa), 5'ss of exon 10
GGTGAGGCGTTATTCCAGACTCACGAAAACTTGGAACATCTGGCTATGATGGAGAGAGTTCTTGGACCTTTGCCGTACCATATGCTTAAGAGGGCAGAgtatgttccataccaatgcaagtctgaacatcaatgctgtgaggtctggtcgatatcttgtcttactaatccttgtttgt--agtcggcactctgacaaatacatcag
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GGAGAAGCATTGTTTCAGACCCATGAAAACTTGGAGCATCTTGCTATGATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgctgtccttgatccgtctcattgtcagt------aagcattcacagcattggggattagtaggtattgtgtgctcatttgttgcttgtatgtag-------
upper sequence: GRMZM2G063792_T05 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA04G36360.1 (Glycine max), 5'ss of exon 9
GGTGAGGCGTTATTCCAGACTCACGAAAACTTGGAACATCTGGCTATGATGGAGAGAGTTCTTGGACCTTTGCCGTACCATATGCTTAAGAGGGCAGAgtatgttccataccaatgcaagtctgaacatcaatgctgtgaggtctggtcgatatcttgtcttactaatccttgtttgtagtcggcactctgacaaatacatcag
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GGTGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTGGCTATGATGGAGAGGGTGCTTGGTCCTATACCACAGCAGATGTTAAAGAGAGTTGAgtaagtgatttacct-tgtgaattt----tctattattatcaaatttatcaaatgattgaacttgaacataaccgagtgtatcttttactctgccca-tgtag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33099166|gb|CF059126.1|CF059126EST: ACCATATGCTTAAGAGGGCAGA AAAAGGACGCCTGAATTGGCCTGAGGGTTGCACCTCGCGGGAGAGCATGAA
genomic: ACCATATGCTTAAGAGGGCAGAgtatgttcca ... aatacatcagAAAAGGACGCCTGAATTGGCCTGAGGGTTGCACCTCGCGGGAGAGCATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGAGGCGTTATTCCAGACTCACGAAAACTTGGAACATCTGGCTATGATGGAGAGAGTTCTTGGACCTTTGCCGTACCATATGCTTAAGAGGGCAGAgtatgttccataccaatgcaagtctgaacatcaatgctgtgaggtctggtcgatatcttgtcttactaatccttgtttgtagtcggcactctgacaaatacatcag
- - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG