1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAATGTGCTACGGATGGTAGGAAAGAGGAACTAAACAGTCAAACATCAGTAGAGGGCGATGGTATTAATGCAAAGCCAGAGATTTCAATGgtaccggttatgaccctaacaacattgatttgtttaggatgcttagacttctttggttttctgattactgatgtaatccttatgtaaatcttactatttctttcagcag
species | Zea mays |
transcript | GRMZM2G062230_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAACATCAGTAGAGGGCGATGGTATTAATGCAAAGCCAGAGATTTCAATG CEST: gi|148928279|gb|EE284874.2|EE284874
genomic: AAACATCAGTAGAGGGCGATGGTATTAATGCAAAGCCAGAGATTTCAATGgtaccggtta ... ctttcagcag-
EST: AAACATCAGTAGAGGGCGATGGTATTAATGCAAAGCCAGAGATTTCAATG CEST: gi|148928279|gb|EE284874.2|EE284874
genomic: AAACATCAGTAGAGGGCGATGGTATTAATGCAAAGCCAGAGATTTCAATGgtaccggtta ... ctttcagcag-
EST: AAACATCAGTAGAGGGCGATGGTATTAATGCAAAGCCAGAGATTTCAATG CEST: gi|71757777|gb|DR955714.1|DR955714
genomic: AAACATCAGTAGAGGGCGATGGTATTAATGCAAAGCCAGAGATTTCAATGgtaccggtta ... ctttcagcag-
EST: AAACATCAGTAGAGGGCGATGGTATTAATGCAAAGCCAGAGATTTCAATG GAGTCAGCTGGTGACCCAGAGCGTGAAGCATCTTGCCCCAGACTCTTGGGTEST: gi|211104855|gb|FL162455.1|FL162455
genomic: AAACATCAGTAGAGGGCGATGGTATTAATGCAAAGCCAGAGATTTCAATGgtaccggtta ... ctttcagcagGAGTCAGCTGGTGACCCAGAGCGTGAAGCATCTTGCCCCAGACTCTTGGGT
EST: AAACATCAGTAGAGGGCGATGGTATTAATGCAAAGCCAGAGATTTCAATGCAGEST: gi|7242231|gb|AW574432.1|AW574432
genomic: AAACATCAGTAGAGGGCGATGGTATTAATGCAAAGCCAGAGATTTCAAT---Ggtaccggtta ... ctttcagc
EST: AAACATCAGTAGAGGGCGATGGTATTAATGCAAAGCCAGAGATTTCAATG GAGTCAGCTGGTGACCCAGAGCGTGAAGCATCTTGCCCCAGACTCTTGGGT
genomic: AAACATCAGTAGAGGGCGATGGTATTAATGCAAAGCCAGAGATTTCAATGgtaccggtta ... ctttcagcagGAGTCAGCTGGTGACCCAGAGCGTGAAGCATCTTGCCCCAGACTCTTGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATGTGCTACGGATGGTAGGAAAGAGGAACTAAACAGTCAAACATCAGTAGAGGGCGATGGTATTAATGCAAAGCCAGAGATTTCAATGgtaccggttatgaccctaacaacattgatttgtttaggatgcttagacttctttggttttctgattactgatgtaatccttatgtaaatcttactatttctttcagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG