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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGGACTCGATGCAAGGCTTAGGGAGATCCGAAGCTATTTGGATCTTGTAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAGgctagtctctttcttgaaatttgtcatgtattacttttactggaattgaatgaactaaacggtaaatgctgaaatctaccagctttcttagtagcagtag...

Basic information

species Zea mays
transcript GRMZM2G061745_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g56646.1 (Oryza sativa), 5'ss of exon 7
AAAGGGACTCGATGCAAGGCTTAGGGAGATCCGAAGCTATTTGGATCTTGTAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAGgctagtctctttcttgaaatttgtcatgtattacttttactggaattgaatgaactaaacggtaaatgctgaaatctaccagctttcttag--tagcagtag--
 || ||||| || |||||||| |||||||||||  | || || |||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||| | | ||  | ||      ||    | |  || | |||  ||| ||  ||  ||    |  |     ||   || | | |  ||  | ||   |||| | |  
GAAAGGACTGGACGCAAGGCTCAGGGAGATCCGTGGGTACTTAGATCTTGTAATTGAAGGGAAGCTCCCACTGAATCATGAGATTTTGTACCACTTGCAGgttcgccttctactcattgctttctgtatggtattctta--ggagttacatatacctcccaatt--ctcttgcatttgctatattattgaggtcagcacttgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211382592|gb|FK956034.1|FK956034
EST:     TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAG                         GATGTCTTTAATCTCCTTCCAAATCTGAACGTAATTGAGCTAATTTAAAGC
genomic: TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAGgctagtctct ... ttttttgcagGATGTCTTTAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATT-AAAGC
EST: gi|211382593|gb|FK956035.1|FK956035
EST:     TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAG                         GATGTCTTTAATCTCCTTCCAAATCTGAACGTAAATGAGCTAATTAAAGCC
genomic: TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAGgctagtctct ... ttttttgcagGATGTCTTTAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCC
EST: gi|211382591|gb|FK956033.1|FK956033
EST:     TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAG                         GATCTCTTTAATCTCCTTCCAAATCTGAACGTAAATGAGCTAATTAAAGCC
genomic: TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAGgctagtctct ... ttttttgcagGATGTCTTTAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCC
EST: gi|211385218|gb|FK956039.1|FK956039
EST:     TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAG                         GATGTCTTTAATCTCCTTCCAAATCTGAACGTAAATGAGCTAATTAAAGCC
genomic: TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAGgctagtctct ... ttttttgcagGATGTCTTTAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCC
EST: gi|149014660|gb|EE044326.2|EE044326
EST:     AATTGACGGGAAGCTCCCCACTGA-TCACGAAATTTTGTACCATTTGCAG                         GATGTCTTTAATCCTCCTTC-AAATTT
genomic: AATTGACGGGAAGCTCCC-ACTGAATCACGAAATTTTGTACCATTTGCAGgctagtctct ... ttttttgcagGATGTCTTTAATC-TCCTTCCAAATTT
EST: gi|30705314|gb|CD058743.1|CD058743
EST:     TTGACGGNGAAGCTCCCACTNGAATCACGANAATTTTGTACCATTTGCAG                         GATGTCTTTAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCC
genomic: TTGACGG-GAAGCTCCCACT-GAATCACGA-AATTTTGTACCATTTGCAGgctagtctct ... ttttttgcagGATGTCTTTAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCC
EST: gi|67017978|gb|CO446727.1|CO446727
EST:     TAATTGACGGGAAGCTCCCACTGA-TCACGAAATTT-GTACCATTTGCAG                         GATGTCTTNTA-TCTCCTTCCNAATTTGAACGTNAATGAGCTAATTAA
genomic: TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAGgctagtctct ... ttttttgcagGATGTCTT-TAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAA
EST: gi|148960678|gb|EE011309.2|EE011309
EST:     TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAG                         GATGTCTTTAAT
genomic: TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAGgctagtctct ... ttttttgcagGATGTCTTTAAT
EST: gi|211385220|gb|FK956041.1|FK956041
EST:     TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAG                         GATGTCTTTAATCTCCTTCCAAATCTGAACGTAAATGAGCTAATTAAAGCC
genomic: TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAGgctagtctct ... ttttttgcagGATGTCTTTAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCC
EST: gi|211385221|gb|FK956042.1|FK956042
EST:     TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAG                         GATGTCTTTAATCTCCTTCCAAATCTGAACGTAAATGAGCTAATTAAAGCC
genomic: TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAGgctagtctct ... ttttttgcagGATGTCTTTAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCC
EST: gi|211385222|gb|FK956043.1|FK956043
EST:     TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAG                         GATGTCTTTAATCTCCTTCCAAATCTGAACGT
genomic: TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAGgctagtctct ... ttttttgcagGATGTCTTTAATCTCCTTCCAAATTTGAACGT
EST: gi|211385224|gb|FK956045.1|FK956045
EST:     TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAG                         GATGTCTTTAATCTCCTTCCAAATCTGAACGTAAATGAGCTAATTAAAGCC
genomic: TAATTGACGGGAAGCTCCCACTGAATCACGAAATTTTGTACCATTTGCAGgctagtctct ... ttttttgcagGATGTCTTTAATCTCCTTCCAAATTTGAACGTAAATGAGCTAATTAAAGCC