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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGCACCGCCTCCGAGTTCCCAACCAGTCGACCCTGTTCAGGCGGTACAACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactccccttgcatgcacaatgccatctttgcaactagttgaatttgtttctcatatttgcccttgtctgaactgtag

Basic information

species Zea mays
transcript GRMZM2G061620_T02
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76012358|gb|DT939528.1|DT939528
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|7216451|gb|AW562573.1|AW562573
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGAT
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGAT
EST: gi|33103619|gb|CF063579.1|CF063579
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|32944591|gb|CF049410.1|CF049410
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|33103634|gb|CF063594.1|CF063594
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|60396214|gb|DN229083.1|DN229083
EST:     TGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: TGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|101401580|gb|EB822466.1|EB822466
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|32850730|gb|CD990411.1|CD990411
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|76280698|gb|DV020266.1|DV020266
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|33104092|gb|CF064052.1|CF064052
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|78073733|gb|DV502167.1|DV502167
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|211501745|gb|FL041143.1|FL041143
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|78078954|gb|DV507366.1|DV507366
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|60355834|gb|DN222807.1|DN222807
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|76280697|gb|DV020265.1|DV020265
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|76288771|gb|DV028339.1|DV028339
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTGCACCGCCTCCGAGTTCCCAACCAGTCGACCCTGTTCAGGCGGTACAACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactccccttgcatgcacaatgccatctttgcaactagttgaatttgtttctcatatttgcccttgtctgaactgtag

- - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA