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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACACAAACCTACGTAGAGTGACATACCTTGTGTTGGATGAGGCGGACCGGATGCTAGATATGGGGTTTGAGCCCCAAATTCGAAAAATAGTAGCACAAgtacatttccgtttagaaatgcagaattcttactaatatctattgtctttcctagctctaatgcttgtccaacacttctgctatccttag

Basic information

species Zea mays
transcript GRMZM2G059020_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059020_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g68320.3 (Oryza sativa), 5'ss of exon 5
TCACACAAACCTACGTAGAGTGACATACCTTGTGTTGGATGAGGCGGACCGGATGCTAGATATGGGGTTTGAGCCCCAAATTCGAAAAATAGTAGCACAAgtacatttccgtttagaaatgcagaattcttactaatatct--attgtctttcctagctctaatgcttgtccaacacttctgctatccttag
|||||| ||||| || ||||| |||||||| ||  |||||||||| ||||| ||||| || ||||| ||||||||||| ||||| |||||||| ||||| | |    |   |||||||       ||   | ||  | | |    |  || |||    | |      ||   |||  || || | |   |||
TCACACTAACCTGCGAAGAGTAACATACCTCGTCCTGGATGAGGCTGACCGCATGCTTGACATGGGTTTTGAGCCCCAGATTCGTAAAATAGTGGCACAGgcatggcttgttttagaatgcttatatcagttctggtgttttggctaactctccattttttctattgtgctaaacgtttttgttgttaatag

upper sequence: GRMZM2G059020_T01 (Zea mays), 5'ss of exon 7
lower sequence: EDP09760 (Chlamydomonas reinhardtii), 5'ss of exon 4
TCACACAAACCTACGTAGAGTGACATACCTTGTGTTGGATGAGGCGGACCGGATGCTAGATATGGGGTTTGAGCCCCAAATTCGAAAAATAGTAGCACAAgtacatttccgtttagaaa----tgcagaattcttactaatatc---tattgtctttcctagctctaatgcttgtccaa-cacttctgctatccttag--
   ||| ||||| ||  | ||||||||||| ||| |||| ||||||||||| ||||| || ||||| |||||||| || || || || || || |  || ||       ||    | |     || |     |     ||        |  |     |   ||   ||  |  | ||   |||  | |  |  | ||   
CATCACCAACCTGCGGCGTGTGACATACCTGGTGCTGGACGAGGCGGACCGCATGCTGGACATGGGCTTTGAGCCGCAGATCCGCAAGATTGTGGACCAGgtggggcggcggggcggaggcggtgtatggagcggggcaaggcggggcagggcagggcagggcagcaagccggggccgggcacgacgggcagtcctacag