1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTCTCAAGGATTCATTTTTGGACGAAGGgtatgtatttatagaaaaattgccacttgattcttttgaccacacagcactgggctgcatgcaaattctctcacctagcaccaaattctcctttctgtca...
species | Zea mays |
transcript | GRMZM2G058276_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATTCTGAAGAAACCTGGAGGATCTCTTAAGGATTCATTTTTGGACGAAGG ATTCATTCTTGACAAGAAAATTGGCATCGGGCAGCCAAAGAGGATTGAGAAEST: gi|211486980|gb|FL134661.1|FL134661
genomic: ATTCTGAAGAAACCTGGAGGATCTCTCAAGGATTCATTTTTGGACGAAGGgtatgtattt ... ctatttgcagATTCATTCTTGACAAGAAAATTGGCATCGGGCAGCCAAAGCGGATTGAGAA
EST: ATTCTGAAGAAACCTGGAGGATCTCTCAAGGATTCATTTTTGGACGAAGG ANTCATTCTTGACAAGAAAATTGGCATCGGGCAGCCAAAGCGGATTGAGAAEST: gi|32909064|gb|CF013876.1|CF013876
genomic: ATTCTGAAGAAACCTGGAGGATCTCTCAAGGATTCATTTTTGGACGAAGGgtatgtattt ... ctatttgcagATTCATTCTTGACAAGAAAATTGGCATCGGGCAGCCAAAGCGGATTGAGAA
EST: ATTCTGAAGAAACCTGGAGGATCTCTTAAGGATTCATTTTTGGACGAAGG ATTCATTCTTGACAAGAAAATTGGCATCGGGCAGCCAAAGCGGATTGAGAA
genomic: ATTCTGAAGAAACCTGGAGGATCTCTCAAGGATTCATTTTTGGACGAAGGgtatgtattt ... ctatttgcagATTCATTCTTGACAAGAAAATTGGCATCGGGCAGCCAAAGCGGATTGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTCTCAAGGATTCATTTTTGGACGAAGGgtatgtatttatagaaaaattgccacttgattcttttgaccacacagcactgggctgcatgcaaattctctcacctagcaccaaattctcctttctgtca
- - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagaaaaa