Sequence
atgc intronic sequence ATGC exonic sequenceGTCTGGTGGCTGATGTTGATATTGAATCGGAGAAGTATAGGTGGATGGGAAGTGCTCGCCTTGAATTTTATgtatactttctatccttaaagcttgtaccaacctttttttaaaaaaacttatatcaactacttgattttatttttcatatctatatgcttctctgtcctt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G057475_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g37580.3 (Oryza sativa), 5'ss of exon 3
GTCTGGTGGCTGATGTTGATATTGAATCGGAGAAGTATAGGTGGATGGGAAGTGCTCGCCTTGAATTTTATgtatactttctatccttaaagcttgtaccaacctttttttaaaaaaacttatatcaactacttgattttatttttcatatctatatgcttctc-tgtcctt
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GTCTGGTAGCTGATATCGATATTGAGTCAGAGAAGTACAGGTGGATGGGCAGTGCTCGTCTTGACTTCTATgtatgcattcta-ccataactctatcaaacactcaattatatccatatgctttctctcctctctctttcctctcctttatttatgtggtcctcatggtcag
upper sequence: GRMZM2G057475_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA15G07340.1 (Glycine max), 5'ss of exon 7
GTCTGGTGGCTGATGTTGATATTGAATCGGAGAAGTATAGGTGGATGGGAAGTGCTCGCCTTGAATTTTATgtatactttctatccttaaagcttgtaccaacctttttttaaaaaaacttatatcaactacttgattttatttttcatatctatatgcttctctgtcctt--
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GTCTGGTGGCAGATATTGACATTGAGTCTGAAAAGTACCGGTGGATGGGAAGTGCTCGTCTAGATTTTTATgtcagtagtccatt-ttataacttttgc-atgtttattaatgatgtttttctttcacttatatgtgtgtctcttttatggattatcgttgcaattattttct
upper sequence: GRMZM2G057475_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA08G06300.1 (Glycine max), 5'ss of exon 7
GTCTGGTGGCTGATGTTGATATTGAATCGGAGAAGTATAGGTGGATGGGAAGTGCTCGCCTTGAATTTTATgtatactttctatccttaaagc-ttgtaccaacctttttttaaaaaaacttatatcaactacttgattttatttttcatatc-tatatgcttctctgtcctt
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GTCTGGTTGCTGATATTGATATCGAGTCTGAAAAGTATAGGTGGATGGGAAGTGCTCGTATTGATTTTTATgttagtaagccatgtaataagtaccatgacatgcttgttt--atgatgcttttcttcattgttgtgtccttttatatgaattatctttgcattagttatctt
upper sequence: GRMZM2G057475_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv00s0181g00250.t01 (Vitis vinifera), 5'ss of exon 7
GTCTGGTGGCTGATGTTGATATTGAATCGGAGAAGTATAGGTGGATGGGAAGTGCTCGCCTTGAATTTTATgtatactttctatccttaaagcttgtaccaacctttttttaaaaaaacttatatcaactacttgattttatttttcatatctatatgcttctctgtcctt--
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GTCTGGTGGCAGATATTGACATTGAGTCTGAAAAATATAGGTGGATGGGAAGTGCTCGTTTAGATTTCTACgtatgtcctgaaatatttc--cttatttcttatcttctatgacttcaattgcattaataatcatatggaattttcctcttttataccatataatgtttctaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67017796|gb|CO446545.1|CO446545EST: GATGGGAAGTGCTCGCCTTNG-ATTTTAT CTCCTACTCCGCATGCTGAACCTGCGAAGGTACAATGGGCGCATCCTTTT
genomic: GATGGGAAGTGCTCGCCTT-GAATTTTATgtatactttc ... ttctttccagCTCCTACTCCGCATGCTGAACCTGCGACGGTACAATGGGCGCATCCTTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCTGGTGGCTGATGTTGATATTGAATCGGAGAAGTATAGGTGGATGGGAAGTGCTCGCCTTGAATTTTATgtatactttctatccttaaagcttgtaccaacctttttttaaaaaaacttatatcaactacttgattttatttttcatatctatatgcttctctgtcctt
- - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - GGTGGA