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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTGTTGATGACACACTCGAGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttaggaaatgcggagccggagctccagaatattttgccggtcgcttgctgcactcattgtgcttagtgccttagtaccacctgttggcaatgttctttacaatgtttgccatgcag

Basic information

species Zea mays
transcript GRMZM2G056572_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G056572_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g56450.2 (Oryza sativa), 5'ss of exon 7
---GAAGTTGTTGATGACACACTCGAGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttaggaaatgcggagccggagctccagaatattttgccggtcgcttgctgcactcattgtgcttagtgccttagtaccacctgttggcaatgttctt-tacaatgtttgccatgcag
   |||||| ||||| || | |||||||| || || |||||||||||||||||||||||||| ||  | || ||||||| ||    ||   | |     ||    |||| |||||   |     |    | | || ||||||||  ||   |||  || ||| |||    || |||| | ||               
GAGGAAGTTATTGATCACTCTCTCGAGTTCCTCATTCTTGCAAGTGATGGGCTGTGGGATGTAGTAACCAATGAGgtaaattcaagaaaatgaaa----ag----agaagatttttatgtatcttaatcgtattccttgtgcttgatg---tag--cccccttttgcatttgctcttatgcag--------------

upper sequence: GRMZM2G056572_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA04G06250.1 (Glycine max), 5'ss of exon 8
---GAAGTTGTTGATGACACACTCGAGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttaggaaatgcggagccggagctccagaatattttgccggtcgcttgctgcactcattgtgcttagtgccttagtaccacctgttggcaatgttctttacaatgtttgccatgcag
   |||   |||||   | | || ||||||||||| || || ||||| ||||| |||||||| |||||||| |||||  ||      |||   |            ||  | |    ||     |      |  || |     |||   |  | |    |     ||  ||                         
GAAGAAAAAGTTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgt--ttgtactgatgttcatttcttctcattgatgactaaaacgcatcttcatcataaccactaaaagtaggagcaaaatggagcaaaaaggatataaaaac-------------------

upper sequence: GRMZM2G056572_T03 (Zea mays), 5'ss of exon 7
lower sequence: AT4G31750.1 (Arabidopsis thaliana), 5'ss of exon 8
---GAAGTTGTTGATGACACACTCGAGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttaggaaatgcggagccggagctccagaatattttgccggtcgcttgctgcactcattgtgcttagtgccttagtaccacctgttggcaatgttctttacaatgtttgccatgcag
   |||   ||||||  | | ||||||||||| || |||||||||||||| || ||||| || || ||||||||||     |||||| ||        ||  || | | |    ||       ||| ||    | |   | |  | | |||  |   ||     ||   || |   ||  ||| |||    | |||
GAGGAAAAAGTTGATAGCTCTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTCTGGGACGTTGTATCTAACGAGg-----taggaagtgtca--tttgatttctaaacttccctgttaa--acttcctctttttaacattcccaat-cctcggactcaaaaactg---atctctgttcaaatctttat--ttcag

upper sequence: GRMZM2G056572_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
---GAAGTTGTTGATGACACACTCGAGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttaggaaatgcggagccggagctccagaatattttgccggtcgcttgctgcactcattgtgcttagtgccttagtacca-cctgttggcaatgttctttacaatgtttgccatgcag
   |||    ||||   | | |||||||||||||||||||| |||||||| ||||||||||| ||| | || |||||    | |      ||   |     ||  |      ||||   |     || || |    |    |  |   | | |    |  |||  | || |  | | | || ||  ||  ||     
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgt----ttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatat-tcacacacaacccttcacagtcttcctcatagcta-atacgtcaccat--ttatcag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76016319|gb|DT943489.1|DT943489
EST:     AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAG                         GAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
genomic: AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
EST: gi|211036167|gb|FL457683.1|FL457683
EST:     AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAG                         GAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
genomic: AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
EST: gi|94472146|gb|EB701104.1|EB701104
EST:     GTTTCTTATCCTTTGCA-GTGATGGGCTGTGGGATGTGGTCTCTAACGAG                         GAAGCTGTTGCGATGA
genomic: GTTTCTTATCCTT-GCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGA
EST: gi|31406343|gb|CD485075.1|CD485075
EST:     AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAG                         GAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
genomic: AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
EST: gi|76016318|gb|DT943488.1|DT943488
EST:     AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAG                         GAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
genomic: AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
EST: gi|60354881|gb|DN221854.1|DN221854
EST:     AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAG                         GAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
genomic: AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
EST: gi|5124063|gb|AI745904.1|AI745904
EST:     AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAG                         GAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
genomic: AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
EST: gi|211036166|gb|FL457682.1|FL457682
EST:     AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAG                         GAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
genomic: AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
EST: gi|76290021|gb|DV029589.1|DV029589
EST:     AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAG                         GAAGCTGTTGCGATGACT
genomic: AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGACT
EST: gi|60338245|gb|DN205218.1|DN205218
EST:     AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAG                         GAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
genomic: AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
EST: gi|6095655|gb|AW120322.1|AW120322
EST:     AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAG                         GAAGCTGTCGCGATGACTAGATCCATTCAGGACCCAGAAGAGGCTGCAAAG
genomic: AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
EST: gi|60359261|gb|DN226234.1|DN226234
EST:     AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAG                         GAAGCTGTTGCGATGACTAGAT
genomic: AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGACTAGAT
EST: gi|60357297|gb|DN224270.1|DN224270
EST:     AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAG                         GAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGGTGCAAAG
genomic: AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
EST: gi|166579571|gb|EG295241.1|EG295241
EST:     GTGGTCTCTAACGAG                         GAAGCTGTCGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
genomic: GTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
EST: gi|149111015|gb|EE294514.2|EE294514
EST:     AGTTTTTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTTTAACGAG                         GAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
genomic: AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
EST: gi|71762691|gb|DR960628.1|DR960628
EST:     AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAG                         GAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG
genomic: AGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttagg ... tgccatgcagGAAGCTGTTGCGATGACTAGATCCATTAAGGACCCAGAAGAGGCTGCAAAG