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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCCGTTTGTTATGGTGAATTTTGATGGCGATCCAACTGCTGATTCTGAGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGGgtgagttctgtttcctcaagttttttctgccctaggctttattttttaatggcgaagcatgctcattatcttgtatattctagatcagcgttacaaggac...

Basic information

species Zea mays
transcript GRMZM2G055520_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G055520_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g06070.1 (Oryza sativa), 5'ss of exon 7
GGAGCCGTTTGTTATGGTGAATTTTGATGGCGATCCAACTGCTGATTCTGAGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGGgtgagttctgtttcctcaagttttttctgccctaggctttatt-ttttaatggcga-agcatgctcattatcttgtatattctagatcagcgtt-acaaggac
 || | |||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| || |||||| | |  ||||||||||| ||||| |||||||||| | |||       ||||  ||    |    | |  | || | ||  |   ||  | |     | | ||||| |  ||  |  | | | | | ||  
TGATCAGTTTGTTATGGTGAATTTTGATGGAGATCCTACTGCCGATTCAGAGCAGTACAACAAGCTAGAGAGATCTGAGCGTGATGAATGCGAATCCCGGgtgagttgtttttttct---ttttggctatttttttttctggtgttctcataactctaggttccattgcaacatgtatttaatatgtttgagctgatatgggt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67028367|gb|CO457116.1|CO457116
EST:     AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGG                         GCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
genomic: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGGgtgagttctg ... ttcatggcagGCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
EST: gi|6445442|gb|AW179360.1|AW179360
EST:     AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGG                         GCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
genomic: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGGgtgagttctg ... ttcatggcagGCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
EST: gi|51592768|gb|CV071914.1|CV071914
EST:     AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGG                         GCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
genomic: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGGgtgagttctg ... ttcatggcagGCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
EST: gi|6445422|gb|AW179490.1|AW179490
EST:     AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGG                         GCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
genomic: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGGgtgagttctg ... ttcatggcagGCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
EST: gi|76286686|gb|DV026254.1|DV026254
EST:     AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGG                         GCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
genomic: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGGgtgagttctg ... ttcatggcagGCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
EST: gi|101389744|gb|EB816806.1|EB816806
EST:     AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGG                         GCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
genomic: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGGgtgagttctg ... ttcatggcagGCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG