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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCTTGGGACCTGAAAACGGACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatactttgaccttaagcatcgattaaatattcaaacatgctgatgctctctattgctttgtaaaatatattgatatacatcagagaaagatgatatgcttatgctattttgagctaactcag

Basic information

species Zea mays
transcript GRMZM2G055020_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G055020_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g32060.1 (Oryza sativa), 5'ss of exon 6
CCTCCTTGGGACCTGAAAACGGACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatactttgaccttaagcatcgattaaatattcaaacatgctgat-gctctcta---ttgctttgtaaaatat-attgatatacatcagagaaagatgatatgcttatgctattttgag-ctaactcag------
||||||||||||  |||| ||||||||||||||||||||||||| || ||||| || |||||| || | |||||||  |   |||||| ||||| ||   | |     |||   |||   ||  || | ||   |   ||| |  | | | ||  | ||  |    | ||   |   |||     ||| ||||| | ||    ||       
CCTCCTTGGGACGCGAAATCGGACAACACATTCATCATCCATTACACTTATGGGTGTGATTATACATTAAAGgtgactactgtttgactttaagtatatgtcatcatatcagttatgtcaattactttgtaaaatctatttatgcattgtcatcaaaattaactttataagcttctcatgaaagagcttttttgtgtcttgtccaaactcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5468725|gb|AI834516.1|AI834516
EST:     GCAACNCATTCATCATCCCTTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|71761576|gb|DR959513.1|DR959513
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|5895926|gb|AW037172.1|AW037172
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|74237664|gb|DT645578.1|DT645578
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|78082143|gb|DV510555.1|DV510555
EST:     ACAACACATTCATCATCCATTATACGTATGGATGGGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATGGGTGAATGGGGTTTTGACAAAAGATTT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|76015780|gb|DT942950.1|DT942950
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|5686756|gb|AI939849.1|AI939849
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|211541009|gb|FL454732.1|FL454732
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTATTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|76917228|gb|DV166719.1|DV166719
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|74245896|gb|DT653810.1|DT653810
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|71763634|gb|DR961571.1|DR961571
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATTT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|60347170|gb|DN214143.1|DN214143
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|78023550|gb|DV491937.1|DV491937
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|211218550|gb|FL110185.1|FL110185
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAA                         GGTCAGCTTACTTATGGGAAAA
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAA
EST: gi|113702992|gb|EE680496.1|EE680496
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|71760330|gb|DR958267.1|DR958267
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|60351853|gb|DN218826.1|DN218826
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|33094629|gb|CF054623.1|CF054623
EST:     ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
EST: gi|148981075|gb|EE027418.2|EE027418
EST:     ACAACACATTCTTCATCCATTATAGGTATGGATGGGATTATTCAATGAAG                         GGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT
genomic: ACAACACATTCATCATCCATTATACGTATGGATGCGATTATTCAATGAAGgtgataatac ... gctaactcagGGTCAGCTTACTTATGGGAAAATCGGTGAATGGCGTTTTGACAAAAGATCT