1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGTTGATCTTGCATCAAAGTGTCTGCAATTTGAATCTAGGGATAGACCGAACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagctgcaacacctttttcctgttgttcaccccccttcattgcttctagtgacatcatctattcctgtgatgaattcatgcag
species | Zea mays |
transcript | GRMZM2G054634_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAG GTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTACTGCCAEST: gi|211222161|gb|FK968306.1|FK968306
genomic: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagct ... attcatgcagGTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTACTGCCA
EST: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAG GTTGCATCACATGTGTTCEST: gi|32930139|gb|CF034951.1|CF034951
genomic: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagct ... attcatgcagGTTGCATCACATGTGTTC
EST: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAG GTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTAEST: gi|89248037|gb|DY619823.1|DY619823
genomic: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagct ... attcatgcagGTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTA
EST: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAG GTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTACTGCCA
genomic: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagct ... attcatgcagGTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTACTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGATCTTGCATCAAAGTGTCTGCAATTTGAATCTAGGGATAGACCGAACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagctgcaacacctttttcctgttgttcaccccccttcattgcttctagtgacatcatctattcctgtgatgaattcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG