1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTTGATCTTGCATCAAAGTGTCTGCAATTTGAATCTAGGGATAGACCGAACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagctgcaacacctttttcctgttgttcaccccccttcattgcttctagtgacatcatctattcctgtgatgaattcatgcag
species | Zea mays |
transcript | GRMZM2G054634_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAG GTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTACTGCCAEST: gi|211485328|gb|FL295172.1|FL295172
genomic: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagct ... attcatgcagGTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTACTGCCA
EST: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAG GTTGCATCACATGTGTTCATGGGTATTAEST: gi|71439297|gb|DR820347.1|DR820347
genomic: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagct ... attcatgcagGTTGCATCACATGTGTTCATGGGTATTA
EST: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAG GTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTACTGCCAEST: gi|32930139|gb|CF034951.1|CF034951
genomic: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagct ... attcatgcagGTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTACTGCCA
EST: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAG GTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTA
genomic: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagct ... attcatgcagGTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGATCTTGCATCAAAGTGTCTGCAATTTGAATCTAGGGATAGACCGAACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagctgcaacacctttttcctgttgttcaccccccttcattgcttctagtgacatcatctattcctgtgatgaattcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG