1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCTCCCAGAAATGGAGCGACTTTTAAGCTGAATGAAGATGCTGCTCGTGGGCCAACTGAATCCAgtaagcaattgaacatacacattgcggatctctatttgtgtctcagtatcttcttataaaatgatttggtagtgtaccttttatctagttttcatggttgatctgaattgattcctcaactgattctgctatag
species | Zea mays |
transcript | GRMZM2G053019_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGCGACTTTTAAGCTGAATGAAGATGCTGCTCGTGGGCCAACTGAATCCA GTCAATCAGGACCTATGCTATCTGTTGAGACAATTGAGAAGATGATGGAAGEST: gi|71775343|gb|DR973221.1|DR973221
genomic: AGCGACTTTTAAGCTGAATGAAGATGCTGCTCGTGGGCCAACTGAATCCAgtaagcaatt ... tctgctatagGTCAATCAGGACCTATGCTATCTGTTGAGACAATTGAGAAGATGATGGAAG
EST: AGCGACTTTTTAGCTGAATGAAGATGCTGCTCGTGGGCCAACTGAATCCA GTCAATCAGGACCTATGCTAEST: gi|211266715|gb|FL294978.1|FL294978
genomic: AGCGACTTTTAAGCTGAATGAAGATGCTGCTCGTGGGCCAACTGAATCCAgtaagcaatt ... tctgctatagGTCAATCAGGACCTATGCTA
EST: AGCGACTTTTAAGCTGAATGAGGATGCTGCTCGTGGGCCAACTGAATCCA GTCAATCAGGACCTATGCTATCTGTTGAGACAATTGAGAAGATGATGGAAG
genomic: AGCGACTTTTAAGCTGAATGAAGATGCTGCTCGTGGGCCAACTGAATCCAgtaagcaatt ... tctgctatagGTCAATCAGGACCTATGCTATCTGTTGAGACAATTGAGAAGATGATGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCCCAGAAATGGAGCGACTTTTAAGCTGAATGAAGATGCTGCTCGTGGGCCAACTGAATCCAgtaagcaattgaacatacacattgcggatctctatttgtgtctcagtatcttcttataaaatgatttggtagtgtaccttttatctagttttcatggttgatctgaattgattcctcaactgattctgctatag
- - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - GCTGCT