Sequence
atgc intronic sequence ATGC exonic sequenceGCTGAAAGTCTTAACATTAGCAGAGACGTATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACGgtaaggcacattatttttttttctcgaacgcacaggagaactgcgcctcattatatattaagcagaaaaagggggtggtctaaaaagaccaataaggcac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G050186_T05 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g35630.1 (Oryza sativa), 5'ss of exon 7
GCTGAAAGTCTTAACATTAGCAGAGACGTATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACGgtaaggcacattatttttttttctcgaacgcacaggagaact--gcgcctcattatatattaagc----agaaaaagggggtggtctaaaaagaccaataaggcac
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GCTGAGAGCCTTAACATTAGTAGAGATGTCTCCGGTGAAGGTGTCCAGCAGGCTTTGTTGAAAATGCTGGAAGGCACAgtaagtgat-ttgcattgatctccttatggcctggttagcttatgtgtcttttggcatactgaatcacaatatataaagtgaaaccttaataagcagatat-----
upper sequence: GRMZM2G050186_T05 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA09G28260.1 (Glycine max), 5'ss of exon 8
GCTGAAAGTCTTAACATTAGCAGAGACGTATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACGgtaaggcacattatttttttttc---tcgaacgcacaggagaactgcgcctcatt-atatattaagcagaaaaagggggtggtctaaaaagaccaataaggcac
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GCCGAGAGCTTAAATATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTGAAAATGCTGGAAGGAACTgtaag-taaaggatctagaatgcagttgttgctaactagtttattgtatctcatttatactgcaactgtaatctgtaatttgacaagcaattgtaattata---
upper sequence: GRMZM2G050186_T05 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 8
GCTGAAAGTCTTAACATTAGCAGAGACGTATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACGgtaaggcacattatttttttttc---tcgaacgcacaggagaactgcgcctcatt-atatattaagcagaaaaagggggtggtctaaaaagaccaataaggcac
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TCCAAGAGCTTAAATATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTGAAAATGCTTGAAGGAACTgtaag-taaaggatctagaatgcagttgttgctaactggtttattgtatctcatttatattgcaactgaaatctgcaatttgacaagcaattgcaattata---
upper sequence: GRMZM2G050186_T05 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA10G32040.1 (Glycine max), 5'ss of exon 4
GCTGAAAGTCTTAACATTAGCAGAGACGTATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACGgtaaggcacattatttttttttctcgaacgcacaggagaactgcgcctcattatatattaagcagaaaaagggggtggtctaaaaagaccaataaggcac-
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GCTGAGAGCTTGAATATTAGCCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTgtaagtaaaataattccaaaatgt-aattgttgatatttggtttgcttctatgtaaatgaagttctaagtgaactcgtttagtacttatctcctgtttaat
upper sequence: GRMZM2G050186_T05 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA20G35600.1 (Glycine max), 5'ss of exon 7
GCTGAAAGTCTTAACATTAGCAGAGACGTATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACGgtaaggcacattatttttttttctcgaacgcacaggagaactgcgcctcattatatattaagcagaaaaagggggtggtctaaaaagaccaataaggcac-
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GCTGAGAGCTTGAATATTAGCCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTgtaagtaaaataattccaaaatgt-aattgttgataattggtttgcttctatgtaaatgaagttctaagtgaactcgttgagtacttatctcctgtttaat
upper sequence: GRMZM2G050186_T05 (Zea mays), 5'ss of exon 7
lower sequence: Vv18s0089g01240.t01 (Vitis vinifera), 5'ss of exon 7
GCTGAAAGTCTTAACATTAGCAGAGACGTATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACGgtaaggcacattatttttttttctcgaacgcacaggagaactgcgcctcattatatattaagcagaaaaagggggtggtctaaaaagaccaataaggcac
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GCTGAGAGCTTAAACCTTAGCAGAGATGTTTCTGGTGAGGGTGTTCAGCAAGCATTACTGAAAATGCTGGAAGGAACTgtgagtggatcagttttacattcttcagtgttttatatatttctatgtcatcaaacttttatgacttattttagaatgattgctggttgtggtgattcta
upper sequence: GRMZM2G050186_T05 (Zea mays), 5'ss of exon 7
lower sequence: PP1S98_222V6.1 (Physcomitrella patens), 5'ss of exon 8
GCTGAAAGTCTTAACATTAGCAGAGACGTATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACGgtaaggcacattatttttttttctcgaacgcacaggagaactgcgcctcattatatattaagcagaaaaagggggtggtctaaaaagaccaataaggcac------------------------------------
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GCTGAGAGTAAAAATATTAGTCGGGATGTATCTGGTGAAGGTGTTCAGCAGGCACTATTGAAGATGCTTGAAGGCACTgtacgtttcttcttttgtcctctctcacaattctgcagtttcttgctatattttctgccaagcactaat-gcaggtatccagaggggataacgaaggaaactagtttcgatcctgattcagtgtgccttgaaacag
upper sequence: GRMZM2G050186_T05 (Zea mays), 5'ss of exon 7
lower sequence: PP1S163_100V6.1 (Physcomitrella patens), 5'ss of exon 7
GCTGAAAGTCTTAACATTAGCAGAGACGTATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACGgtaaggcacattatttttttt----tctcga---acgcacaggagaactgcgcctcattatatattaagcagaaa------aagggggtgg----tctaaaaagaccaataaggcac-------------------------------------
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GCGGAGAATATGAACATTAGCAGGGATGTATCTGGTGAAGGAGTTCAGCAGGCACTTTTGAAGATGCTGGAAGGAACTgtacgattcaagttctcttctaaaacttcgacatatttgctgttgcacagcgtatccttgtggttcaagtatgtatgttacatggggatgactcttctatgaatgttgatacgttataattctgattgtagtaactgagtaagtcgtgttgcag
upper sequence: GRMZM2G050186_T05 (Zea mays), 5'ss of exon 7
lower sequence: PP1S171_84V6.1 (Physcomitrella patens), 5'ss of exon 7
GCTGAAAGTCTTAACATTAGCAGAGACGTATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACGgtaagg--cacattattttt---ttttctcgaacgcacaggagaactgcgcctcattatatattaa-gcagaaaaagggggtggtctaaaaagaccaataaggcac-----------------------------------------------------------------
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GCAGAGAGTGTGAGCATTAGCCGAGACGTATCTGGTGAAGGCGTTCAGCAGGCGCTATTAAAGATGCTGGAAGGGACTgtaggttcctctttgtttctcaatttatattagttcatttcataacttatctgtatttcctgcaaaagtggaactaattatttgcattcagatatgacagaaggatttttctttttcttttttcctttttttttcttttctttttgatttatttagtatgctgtgatacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9028559|gb|BE238554.1|BE238554EST: TATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACG ATAGTCAACGTTCCTGAGAAAGGAGCAAGGAAGCATCCTCGTGGTGATAAT
genomic: TATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACGgtaaggcaca ... gcatgcttagATAGTCAACGTTCCTGAGAAAGGAGCAAGGAAGCATCCTCGTGGTGATAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGAAAGTCTTAACATTAGCAGAGACGTATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACGgtaaggcacattatttttttttctcgaacgcacaggagaactgcgcctcattatatattaagcagaaaaagggggtggtctaaaaagaccaataaggcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG