Sequence
atgc intronic sequence ATGC exonic sequenceATTAACTGCTCTGGTTGATTCTCAGAATAAGAAAACTGTTAAGATGCAAAAATGGTTTGAGACTAAGGATCCTGAGAAAGCGAAAATGGAAAAAGAAAGGgttagcaaatcactattacttcattatctggtgtatgtaacacaggatgtgcatgtcttgcttttgtccaatatagctgcttgaactaagatccctagtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G048494_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g01880.1 (Oryza sativa), 5'ss of exon 7
ATTAACTGCTCTGGTTGATTCTCAGAATAAGAAAACTGTTAAGATGCAAAAATGGTTTGAGACTAAGGATCCTGAGAAAGCGAAAATGGAAAAAGAAAGGgttagcaaat-cactattacttcattatctg---gtgtatgtaacacagga-----tgtgcatgtcttgcttttgtccaatatagctgcttgaactaagatccctagtt
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ATTAACTGCTCTTGTTGATTCTCAGAATAAGAAAACTGTTAAGATGCAAAAATGGATCGAATCTAAGGATCCTGAGAAAGTGAAGCAGGAAAAAGAAAGGgtaaccaaaaactccatttcttaattcattggatgtatatgcaacactgaatgacatgtgtatgacttacttttgtcc--caatgctgcttctgatatggtt-------
upper sequence: GRMZM2G048494_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g38970.1 (Oryza sativa), 5'ss of exon 7
ATTAACTGCTCTGGTTGATTCTCAGAATAAGAAAACTGTTAAGATGCAAAAATGGTTTGAGACTAAGGATCCTGAGAAAGCGAAAATGGAAAAAGAAAGGgtta-gcaaatcactattacttcattatctg---gtgtatgtaacacagga-----tgtgcatgtcttgcttttgtcc-aatatagctgcttgaactaagatccctagtt
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ATTAACTGCTCTTGTTGATTCTCAGAATAAGAAAACGGTTAAGATGCAAAAATGGATCGAATCTAAGGATCCAGAGAGAGTGAAGCAGGAAAAAGAAAGGgtaacgaaaaactccatttcttaatacattggatgtatatgcaacactgaatgacatgtgcatgacttacatttgccccaatgctgcttctcaaaaacaa----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32804260|gb|CD956496.1|CD956496EST: GATCCTGAGAAAGCGAAAATGGAAAAAGAAAGG GTTTTGGGCCAAAATATTCGAGCCCATTCAATCCTTCAACGCAAAAGAGAA
genomic: GATCCTGAGAAAGCGAAAATGGAAAAAGAAAGGgttagcaaat ... aaacatgcagGTTTTGGGCCAAAATATTCGAGCCCATTCAATCCTTCAACGCAAAAGAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTAACTGCTCTGGTTGATTCTCAGAATAAGAAAACTGTTAAGATGCAAAAATGGTTTGAGACTAAGGATCCTGAGAAAGCGAAAATGGAAAAAGAAAGGgttagcaaatcactattacttcattatctggtgtatgtaacacaggatgtgcatgtcttgcttttgtccaatatagctgcttgaactaagatccctagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA