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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATTAAGGTTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTAgtaagtattttgtattttctgtcacttccgcttgaaaccatgtttgaaacaaatattgagaaatactgaatttttatcctaccgtcag

Basic information

species Zea mays
transcript GRMZM2G047223_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047223_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g31840.1 (Oryza sativa), 5'ss of exon 7
GGTATTAAGGTTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTAgtaagtattttgtattttctgtcacttccgcttgaaaccatgtttgaaacaaatatt--gagaaatactgaatttt-tatcctaccgtcag
|| ||||||||||||||||||||||||||||||||||||||| | || || ||||| || || | |||| | | |   || |   ||  |  ||      | ||| |  |  || ||  ||||  | ||||| ||| || | | | | |||
GGCATTAAGGTTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGgtgaatattctctttgcccttt---ttttggctgcttttgt-tttaagtcttatttttggagatgtgctgaagtttgtaacgtgctgccag

upper sequence: GRMZM2G047223_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g31840.2 (Oryza sativa), 5'ss of exon 6
----------------------------------------GGTATTAAGGTTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTAgtaagtattttgtattttctgtcacttccgcttgaaaccatgtttgaaacaaatatt--gagaaatactgaa-tttttatcctaccgtcag
                                        || ||||||||||||||||||||||||||||||||||||||| | || || ||||| || || | |||| | | |   || |   ||  |  ||      | ||| |  |  || ||  ||||  | ||||| ||| || | | | | |||
AAAAAAAAAATACTGATTACTGTGTCATTGTTATCTACAGGGCATTAAGGTTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGgtgaatattctctttgcccttt---ttttggctgcttttgt-tttaagtcttatttttggagatgtgctgaagtttgtaacgtgctgccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71771757|gb|DR969694.1|DR969694
EST:     TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTA                         GTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTAgtaagtattt ... ctaccgtcagGTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
EST: gi|89247292|gb|DY619078.1|DY619078
EST:     TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTA                         GTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTAgtaagtattt ... ctaccgtcagGTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
EST: gi|60347298|gb|DN214271.1|DN214271
EST:     TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTA                         GTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTAgtaagtattt ... ctaccgtcagGTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
EST: gi|61118400|gb|DN559361.1|DN559361
EST:     TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTA                         GTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTAgtaagtattt ... ctaccgtcagGTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
EST: gi|91874335|gb|EB404292.1|EB404292
EST:     TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTA                         GTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTAgtaagtattt ... ctaccgtcagGTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
EST: gi|78118514|gb|DV536898.1|DV536898
EST:     TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTA                         GTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTAgtaagtattt ... ctaccgtcagGTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
EST: gi|78117554|gb|DV535941.1|DV535941
EST:     TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTA                         GTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTAgtaagtattt ... ctaccgtcagGTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
EST: gi|78113904|gb|DV532293.1|DV532293
EST:     TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTA                         GTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTAgtaagtattt ... ctaccgtcagGTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG
EST: gi|211528671|gb|FL445665.1|FL445665
EST:     TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTA                         GTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTCAG
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGACTCTGTCACGATGATTTAgtaagtattt ... ctaccgtcagGTCAAATTACCTTTTGAGAAACTGCTCTATGCCTTGAGAAATTTCCCTGAG