1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATAGCAGTCTGTGCTGATGACCCTGAATTCCGTCACTACACGGACATCACGGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttcttaaactgtatccacagcttgtccccagtgttacaatccagatcataaaatgcagtaactagagtccaatcgttatgtttctgccgtgttgacag
species | Zea mays |
transcript | GRMZM2G046587_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|211537734|gb|FL105292.1|FL105292
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGAACTTCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAGGATT TTAAAA-GAACGAAAEST: gi|32849179|gb|CD988860.1|CD988860
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|88756535|gb|DY540676.1|DY540676
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|32924525|gb|CF029337.1|CF029337
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|18168735|gb|BM338575.1|BM338575
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|76016905|gb|DT944075.1|DT944075
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|149099848|gb|EE185900.2|EE185900
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|74244614|gb|DT652528.1|DT652528
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|13126527|gb|BG317097.1|BG317097
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|17931649|gb|BM268609.1|BM268609
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|60337363|gb|DN204336.1|DN204336
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|32924252|gb|CF029064.1|CF029064
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|60348368|gb|DN215341.1|DN215341
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|16919746|gb|BM074334.1|BM074334
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|16377933|gb|BI992193.1|BI992193
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAACCAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|32831285|gb|CD970963.1|CD970963
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|74244615|gb|DT652529.1|DT652529
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|13126526|gb|BG317096.1|BG317096
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|9732830|gb|BE511582.1|BE511582
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAACGAAAACAAEST: gi|32851273|gb|CD990954.1|CD990954
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|60354612|gb|DN221585.1|DN221585
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|166574474|gb|EG311149.1|EG311149
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: CGCTTTTTTGAAGATT ATAAAAAGAACGAAAACAAGGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|149099849|gb|EE185901.2|EE185901
genomic: CGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGAEST: gi|32790799|gb|CD943035.1|CD943035
genomic: GGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
EST: GATCCGCCGCTTTTTTGAAGATT ATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
genomic: GATCCGCCGCTTTTTTGAAGATTgtatgttctt ... gtgttgacagATAAAAAGAATGAAAACAAAGAGGTCGCAGTGAATGAGTTCCTGCCAGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGCAGTCTGTGCTGATGACCCTGAATTCCGTCACTACACGGACATCACGGACCTCCCACCGCATCGCCTTCAAGAGATCCGCCGCTTTTTTGAAGATTgtatgttcttaaactgtatccacagcttgtccccagtgttacaatccagatcataaaatgcagtaactagagtccaatcgttatgtttctgccgtgttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA