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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTGGTGTCAACATTATTGAGTTGCCATCTTCCTGGATAAGgtgagaagttgatggcaaatgggacccttagaacattatttttcaattggactgttgatgttttctttgttacgatgttgcacgttgtttaataagtaca...

Basic information

species Zea mays
transcript GRMZM2G046558_T01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60400942|gb|DN233749.1|DN233749
EST:     ATGTTGGTGTCAACATTATTGAGTTGCCATCTTCCTGGATAAG                         GGGGAGGCCGACAAGTTCCTGGCTGAGCAGCAGTTGCTACCTCACAAGTTC
genomic: ATGTTGGTGTCAACATTATTGAGTTGCCATCTTCCTGGATAAGgtgagaagtt ... ctttgtttagGGGGAGGCCGACAAGTTCCTGGCTGAGCAGCAGTTGCTACCTCACAAGTTC
EST: gi|60400756|gb|DN233563.1|DN233563
EST:     ATGTTGGTGTCAACATTATTGAGTTGCCATCTTCCTGGATAAG                         GGGGAGGCCGACAAGTTCCTGGCTGAGCAGCAGTTGCTACCTCACAAGTTC
genomic: ATGTTGGTGTCAACATTATTGAGTTGCCATCTTCCTGGATAAGgtgagaagtt ... ctttgtttagGGGGAGGCCGACAAGTTCCTGGCTGAGCAGCAGTTGCTACCTCACAAGTTC
EST: gi|60400609|gb|DN233416.1|DN233416
EST:     ATGTTGGTGTCAACATTATTGAGTTGCCATCTTCCTGGATAAG                         GGGGAGGCCGACAAGTTCCTGGCTGAGCAGCAGTTGCTACCTCACAAGTTC
genomic: ATGTTGGTGTCAACATTATTGAGTTGCCATCTTCCTGGATAAGgtgagaagtt ... ctttgtttagGGGGAGGCCGACAAGTTCCTGGCTGAGCAGCAGTTGCTACCTCACAAGTTC