1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCACTATTTCCAGGAGAGAGCGCTGTTGATCAGTTGGTAGAGATCATCAAGgtattgcaaaatgttccaaatagaaattctattcctctgccgcgacgttacttattggtatgtgatatgcctgtag
species | Zea mays |
transcript | GRMZM2G045330_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CACTATTTCCAGGAGAGAGCGCTGTTGATCAGTTGGTAGAGATCATCAAG GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATEST: gi|67028577|gb|CO457326.1|CO457326
genomic: CACTATTTCCAGGAGAGAGCGCTGTTGATCAGTTGGTAGAGATCATCAAGgtattgcaaa ... atgcctgtagGTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTAT
EST: CACTATTTCCAGGAGAGAGCGCTGTTGATCAGTTGGTAGAGATCATCAAG GTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTAT
genomic: CACTATTTCCAGGAGAGAGCGCTGTTGATCAGTTGGTAGAGATCATCAAGgtattgcaaa ... atgcctgtagGTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACTATTTCCAGGAGAGAGCGCTGTTGATCAGTTGGTAGAGATCATCAAGgtattgcaaaatgttccaaatagaaattctattcctctgccgcgacgttacttattggtatgtgatatgcctgtag
- - - - - AGGAGA
- - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - AGATCA