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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTCCCTGAAAGGGATATAAGGAACTTTATGGTCCAGATACTGCAAGGTCTTGCATATATGCATAATAATGGGTATTTTCACCGTGATTTAAAACCTGgtaatgtgtcttgttgatattacattggaattatcttatctttctttctgtcaaaataattagtttttttccttctatttgtgcag

Basic information

species Zea mays
transcript GRMZM2G045241_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045241_T07 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g63020.1 (Oryza sativa), 5'ss of exon 6
GCTTTCCCTGAAAGGGATATAAGGAACTTTATGGTCCAGATACTGCAAGGTCTTGCATATATGCATAATAATGGGTATTTTCACCGTGATTTAAAACCTGgtaatgtgtcttgttgatattacattggaattat--cttatctttctttctgtcaaaataattagtttttttccttctatttgtgcag
|||||| | |||  ||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| || || ||||| || |||||  | |||||||||| |   | | |   |||||   ||| | ||||    | ||| | |  |    ||  |||||||  || |  |||   | | |    
GCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgta-tacctttcgactatattctgttgaagttataggctgtctatataccctagaagttaattagccttctctctttcctctttag--

upper sequence: GRMZM2G045241_T07 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0151g00350.t01 (Vitis vinifera), 5'ss of exon 6
GCTTTCCCTGAAAGGGATATAAGGAACTTTATGGTCCAGATACTGCAAGGTCTTGCATATATGCATAATAATGGGTATTTTCACCGTGATTTAAAACCTGgtaatgtgtcttgttgatattacatt--ggaattatcttatctttctttctgtcaaaataattagtttttttccttctatttgtgcag-----------------------------------------------
 |  |  | ||    || ||| ||| |||||||   ||  | |||||||| |||||| | |||||||| ||||| |||||||| || || ||||||||||||| ||    |   |  ||  | |||  | | || |    ||| |  ||  |  ||  | ||| |  | ||       | ||||| ||                                               
CCCCTTTCAGAGGAAGAGATACGGAGCTTTATGTCTCAAGTGCTGCAAGGACTTGCACACATGCATAAAAATGGATATTTTCATCGGGACTTAAAACCTGgta-tgaagttgacttctacaaaattatgcacttgtgcagtctatgatttgg--aattttatttgcatcttcatgaagaattgtgtaggctttatctaatagtgtatattatcaaacaccatttctgtcttcaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76294031|gb|DV033599.1|DV033599
EST:     TCTTGCATATATGCATAATAATGGGTATTTTCACCGTGATTTAAAACCTG                         AGAATTTGTTGGTGACAAATGGTATTTATTAAAATTGCTGACTTTGGGTTG
genomic: TCTTGCATATATGCATAATAATGGGTATTTTCACCGTGATTTAAAACCTGgtaatgtgtc ... atttgtgcagAGAATTTGTTGGTGACAAATGGTATT-ATTAAAATTGCTGACTTTGGGTTG
EST: gi|211539568|gb|FL066768.1|FL066768
EST:     TCTTGCATATATGCATAATAATGGGTATTTTCACCGTGATTTAAAACCTG                         AGAATTTGTTGGTGACAAATGGTATTATTAAAATTGCTGACTTTGGGTTGG
genomic: TCTTGCATATATGCATAATAATGGGTATTTTCACCGTGATTTAAAACCTGgtaatgtgtc ... atttgtgcagAGAATTTGTTGGTGACAAATGGTATTATTAAAATTGCTGACTTTGGGTTGG